FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632278_s_at:

>probe:Drosophila_2:1632278_s_at:660:547; Interrogation_Position=1043; Antisense; GGAGTTCGATGATGATCCCCTGGGC
>probe:Drosophila_2:1632278_s_at:618:225; Interrogation_Position=1140; Antisense; AAGGCTGCAGGCAAACGCGGCCAGA
>probe:Drosophila_2:1632278_s_at:322:5; Interrogation_Position=1176; Antisense; ATTGAGGGCGCCAGGAGCTCCAGCA
>probe:Drosophila_2:1632278_s_at:50:201; Interrogation_Position=1240; Antisense; AACCCACGCCCGATGTGGATGTGGA
>probe:Drosophila_2:1632278_s_at:148:441; Interrogation_Position=1276; Antisense; GATGGCTACCATCAAGCATACAGAT
>probe:Drosophila_2:1632278_s_at:664:41; Interrogation_Position=1313; Antisense; ATCGGATTTTACACACTCAGCGAAA
>probe:Drosophila_2:1632278_s_at:651:323; Interrogation_Position=1332; Antisense; GCGAAACACTTACACTTCATCACAT
>probe:Drosophila_2:1632278_s_at:457:713; Interrogation_Position=1347; Antisense; TTCATCACATTAACACTGTCGCCCA
>probe:Drosophila_2:1632278_s_at:527:597; Interrogation_Position=1363; Antisense; TGTCGCCCACTAGCAGTTATATTTT
>probe:Drosophila_2:1632278_s_at:723:273; Interrogation_Position=879; Antisense; CATTCGGCCGATGAGCTGTACAGGG
>probe:Drosophila_2:1632278_s_at:523:111; Interrogation_Position=921; Antisense; AGCACGGAAAACTGGCTGCCGCGAG
>probe:Drosophila_2:1632278_s_at:618:415; Interrogation_Position=943; Antisense; GAGCCAGTTCCTTGAGCAGCATCGA
>probe:Drosophila_2:1632278_s_at:402:103; Interrogation_Position=979; Antisense; AGACGATCTACGAGCCGAGGACCGA
>probe:Drosophila_2:1632278_s_at:291:407; Interrogation_Position=998; Antisense; GACCGAGACCAAGCGACTGGTTATT

Paste this into a BLAST search page for me
GGAGTTCGATGATGATCCCCTGGGCAAGGCTGCAGGCAAACGCGGCCAGAATTGAGGGCGCCAGGAGCTCCAGCAAACCCACGCCCGATGTGGATGTGGAGATGGCTACCATCAAGCATACAGATATCGGATTTTACACACTCAGCGAAAGCGAAACACTTACACTTCATCACATTTCATCACATTAACACTGTCGCCCATGTCGCCCACTAGCAGTTATATTTTCATTCGGCCGATGAGCTGTACAGGGAGCACGGAAAACTGGCTGCCGCGAGGAGCCAGTTCCTTGAGCAGCATCGAAGACGATCTACGAGCCGAGGACCGAGACCGAGACCAAGCGACTGGTTATT

Full Affymetrix probeset data:

Annotations for 1632278_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720