FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632303_a_at:

>probe:Drosophila_2:1632303_a_at:44:147; Interrogation_Position=2944; Antisense; ACTCACCGAATCAGCGCCAGCGGGA
>probe:Drosophila_2:1632303_a_at:211:329; Interrogation_Position=2963; Antisense; GCGGGAGCAGCGACAGCAGCTACAT
>probe:Drosophila_2:1632303_a_at:142:111; Interrogation_Position=3055; Antisense; AGCAATACGACGCACATGTTCCGGA
>probe:Drosophila_2:1632303_a_at:625:59; Interrogation_Position=3070; Antisense; ATGTTCCGGATGTCGCAGGACCAGC
>probe:Drosophila_2:1632303_a_at:162:127; Interrogation_Position=3089; Antisense; ACCAGCAGTAGTCGCATATAGGGTA
>probe:Drosophila_2:1632303_a_at:416:677; Interrogation_Position=3107; Antisense; TAGGGTAGGCTAGGACCGAATCGAA
>probe:Drosophila_2:1632303_a_at:148:575; Interrogation_Position=3148; Antisense; GGCGTACCTTGCGTTTCTTATATAT
>probe:Drosophila_2:1632303_a_at:715:667; Interrogation_Position=3183; Antisense; TACGACTTGGAAACGTTCTGTGCGT
>probe:Drosophila_2:1632303_a_at:179:291; Interrogation_Position=3196; Antisense; CGTTCTGTGCGTTAGTGTACTTATG
>probe:Drosophila_2:1632303_a_at:714:53; Interrogation_Position=3226; Antisense; ATGCAAATCTTTGTAGCGACCCAAG
>probe:Drosophila_2:1632303_a_at:301:599; Interrogation_Position=3237; Antisense; TGTAGCGACCCAAGGCTTCTCTATT
>probe:Drosophila_2:1632303_a_at:293:421; Interrogation_Position=3275; Antisense; GAGCAATCTATTCGTAACACACCAG
>probe:Drosophila_2:1632303_a_at:445:261; Interrogation_Position=3332; Antisense; CACCTTCGATCCTATATCGTCATAG
>probe:Drosophila_2:1632303_a_at:288:285; Interrogation_Position=3370; Antisense; CTGAACGCTGATCGGCAATGAGACG

Paste this into a BLAST search page for me
ACTCACCGAATCAGCGCCAGCGGGAGCGGGAGCAGCGACAGCAGCTACATAGCAATACGACGCACATGTTCCGGAATGTTCCGGATGTCGCAGGACCAGCACCAGCAGTAGTCGCATATAGGGTATAGGGTAGGCTAGGACCGAATCGAAGGCGTACCTTGCGTTTCTTATATATTACGACTTGGAAACGTTCTGTGCGTCGTTCTGTGCGTTAGTGTACTTATGATGCAAATCTTTGTAGCGACCCAAGTGTAGCGACCCAAGGCTTCTCTATTGAGCAATCTATTCGTAACACACCAGCACCTTCGATCCTATATCGTCATAGCTGAACGCTGATCGGCAATGAGACG

Full Affymetrix probeset data:

Annotations for 1632303_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720