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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632338_a_at:

>probe:Drosophila_2:1632338_a_at:166:507; Interrogation_Position=1011; Antisense; GTGCCTGTGCTGTTGATTTGATGAA
>probe:Drosophila_2:1632338_a_at:367:367; Interrogation_Position=1033; Antisense; GAATCTAGGTCTGGACTGTGCCGAT
>probe:Drosophila_2:1632338_a_at:217:407; Interrogation_Position=1046; Antisense; GACTGTGCCGATACGATGGACCAAT
>probe:Drosophila_2:1632338_a_at:164:439; Interrogation_Position=1088; Antisense; GAGGCACTGATACAGGCGCATCTGC
>probe:Drosophila_2:1632338_a_at:287:333; Interrogation_Position=1180; Antisense; GCTGGGATTCATCGCATTCGCAAGG
>probe:Drosophila_2:1632338_a_at:381:215; Interrogation_Position=1205; Antisense; AAGATGGTGCGCGTCGTTCTTTCGC
>probe:Drosophila_2:1632338_a_at:368:723; Interrogation_Position=1250; Antisense; TTGTTCGTGAGCTTCTACCTGGGAA
>probe:Drosophila_2:1632338_a_at:464:495; Interrogation_Position=1350; Antisense; GTCAGCCGTGTTACTACTCGTAGTG
>probe:Drosophila_2:1632338_a_at:271:83; Interrogation_Position=1371; Antisense; AGTGAAGCCAAAACCCTCAACTGTG
>probe:Drosophila_2:1632338_a_at:336:307; Interrogation_Position=1400; Antisense; CCAGGGTGGTTCGATTTGTTCAGCA
>probe:Drosophila_2:1632338_a_at:616:167; Interrogation_Position=1427; Antisense; AAATGCAACTTGTTCACCTCTGTAC
>probe:Drosophila_2:1632338_a_at:173:239; Interrogation_Position=1456; Antisense; AATAATCCATTTTGACCCTTGCCAG
>probe:Drosophila_2:1632338_a_at:187:337; Interrogation_Position=953; Antisense; GCTCGCGATAGCCACAACAATAACG
>probe:Drosophila_2:1632338_a_at:631:375; Interrogation_Position=977; Antisense; GAAGACGACTGCGACTGTCCAGAGC

Paste this into a BLAST search page for me
GTGCCTGTGCTGTTGATTTGATGAAGAATCTAGGTCTGGACTGTGCCGATGACTGTGCCGATACGATGGACCAATGAGGCACTGATACAGGCGCATCTGCGCTGGGATTCATCGCATTCGCAAGGAAGATGGTGCGCGTCGTTCTTTCGCTTGTTCGTGAGCTTCTACCTGGGAAGTCAGCCGTGTTACTACTCGTAGTGAGTGAAGCCAAAACCCTCAACTGTGCCAGGGTGGTTCGATTTGTTCAGCAAAATGCAACTTGTTCACCTCTGTACAATAATCCATTTTGACCCTTGCCAGGCTCGCGATAGCCACAACAATAACGGAAGACGACTGCGACTGTCCAGAGC

Full Affymetrix probeset data:

Annotations for 1632338_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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