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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632360_s_at:

>probe:Drosophila_2:1632360_s_at:402:659; Interrogation_Position=2906; Antisense; TTAGGAGCGGCCACTTCGGCGGTAT
>probe:Drosophila_2:1632360_s_at:8:289; Interrogation_Position=2922; Antisense; CGGCGGTATTCAAGTCTCGGATCAA
>probe:Drosophila_2:1632360_s_at:278:181; Interrogation_Position=2970; Antisense; AAAAACGCTGACTTTTCGTGCTGCT
>probe:Drosophila_2:1632360_s_at:697:507; Interrogation_Position=2987; Antisense; GTGCTGCTCCGATTTAGACGTCGAT
>probe:Drosophila_2:1632360_s_at:705:285; Interrogation_Position=3012; Antisense; CTGTGGCGGCGCTCAACAATTGGAA
>probe:Drosophila_2:1632360_s_at:520:721; Interrogation_Position=3070; Antisense; TTGCGCAATTTGCATGTCTGCTGTT
>probe:Drosophila_2:1632360_s_at:40:519; Interrogation_Position=3156; Antisense; GTGGGCCACATTTCCTGTGCAATAT
>probe:Drosophila_2:1632360_s_at:169:681; Interrogation_Position=3178; Antisense; TATGACTGTTACACGCGCATTTCAC
>probe:Drosophila_2:1632360_s_at:205:689; Interrogation_Position=3219; Antisense; TATTAGCTCGTAGATTTCGCCGCCA
>probe:Drosophila_2:1632360_s_at:637:537; Interrogation_Position=3273; Antisense; GGTCATTGTATTTGCCCAACCATTT
>probe:Drosophila_2:1632360_s_at:493:693; Interrogation_Position=3335; Antisense; TTTGTTGCCACAATATCTCTGCGGG
>probe:Drosophila_2:1632360_s_at:341:641; Interrogation_Position=3350; Antisense; TCTCTGCGGGCTTTGTTTATCTAAC
>probe:Drosophila_2:1632360_s_at:600:539; Interrogation_Position=3363; Antisense; TGTTTATCTAACTCTACCGGGTCTT
>probe:Drosophila_2:1632360_s_at:116:531; Interrogation_Position=3381; Antisense; GGGTCTTAGTCACTTTCGGGCCAAG

Paste this into a BLAST search page for me
TTAGGAGCGGCCACTTCGGCGGTATCGGCGGTATTCAAGTCTCGGATCAAAAAAACGCTGACTTTTCGTGCTGCTGTGCTGCTCCGATTTAGACGTCGATCTGTGGCGGCGCTCAACAATTGGAATTGCGCAATTTGCATGTCTGCTGTTGTGGGCCACATTTCCTGTGCAATATTATGACTGTTACACGCGCATTTCACTATTAGCTCGTAGATTTCGCCGCCAGGTCATTGTATTTGCCCAACCATTTTTTGTTGCCACAATATCTCTGCGGGTCTCTGCGGGCTTTGTTTATCTAACTGTTTATCTAACTCTACCGGGTCTTGGGTCTTAGTCACTTTCGGGCCAAG

Full Affymetrix probeset data:

Annotations for 1632360_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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