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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632403_at:

>probe:Drosophila_2:1632403_at:498:17; Interrogation_Position=3046; Antisense; ATTTAGTTTCTGGTGCCTTGGTCAT
>probe:Drosophila_2:1632403_at:704:701; Interrogation_Position=3070; Antisense; TTTTGAACACCTTTTGTGGCCCGAT
>probe:Drosophila_2:1632403_at:250:293; Interrogation_Position=3091; Antisense; CGATTTTCTTCTTCTGCATGTACTC
>probe:Drosophila_2:1632403_at:560:153; Interrogation_Position=3126; Antisense; ACAGAGACTTTTTCGCTGTTCGCAC
>probe:Drosophila_2:1632403_at:463:479; Interrogation_Position=3152; Antisense; GTTTCCCAATCTCATACGAAGCTGC
>probe:Drosophila_2:1632403_at:133:85; Interrogation_Position=3191; Antisense; AGTGGATGCGAGCACTTCCATGTCA
>probe:Drosophila_2:1632403_at:450:19; Interrogation_Position=3217; Antisense; ATTTGGCCAACGAAGCTGTCGGCTT
>probe:Drosophila_2:1632403_at:435:571; Interrogation_Position=3237; Antisense; GGCTTTGATATGACTCGTGGCGAAC
>probe:Drosophila_2:1632403_at:584:383; Interrogation_Position=3295; Antisense; GAACTGGCTTCAAGTTGGCTACCCA
>probe:Drosophila_2:1632403_at:285:583; Interrogation_Position=3310; Antisense; TGGCTACCCAGTTTTTCATGCTACA
>probe:Drosophila_2:1632403_at:507:517; Interrogation_Position=3393; Antisense; GTGTGGAAAATCTTTGCGCCGCGAT
>probe:Drosophila_2:1632403_at:149:525; Interrogation_Position=3467; Antisense; GGGCTATCTTTTGGTGTTACGCATC
>probe:Drosophila_2:1632403_at:575:585; Interrogation_Position=3502; Antisense; TGGACACCCTCATTAAGCGCATCAA
>probe:Drosophila_2:1632403_at:253:535; Interrogation_Position=3536; Antisense; GGTCCACTAGTCTCAGCCAATTAAT

Paste this into a BLAST search page for me
ATTTAGTTTCTGGTGCCTTGGTCATTTTTGAACACCTTTTGTGGCCCGATCGATTTTCTTCTTCTGCATGTACTCACAGAGACTTTTTCGCTGTTCGCACGTTTCCCAATCTCATACGAAGCTGCAGTGGATGCGAGCACTTCCATGTCAATTTGGCCAACGAAGCTGTCGGCTTGGCTTTGATATGACTCGTGGCGAACGAACTGGCTTCAAGTTGGCTACCCATGGCTACCCAGTTTTTCATGCTACAGTGTGGAAAATCTTTGCGCCGCGATGGGCTATCTTTTGGTGTTACGCATCTGGACACCCTCATTAAGCGCATCAAGGTCCACTAGTCTCAGCCAATTAAT

Full Affymetrix probeset data:

Annotations for 1632403_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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