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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632477_s_at:

>probe:Drosophila_2:1632477_s_at:2:131; Interrogation_Position=2980; Antisense; ACCTTTGAGGACAAATTTCGAATGA
>probe:Drosophila_2:1632477_s_at:143:387; Interrogation_Position=3048; Antisense; GAAAATCCCAAATTCAGTAAATAGA
>probe:Drosophila_2:1632477_s_at:471:459; Interrogation_Position=3117; Antisense; GATATTATTTCCTGTTTATCATTAA
>probe:Drosophila_2:1632477_s_at:132:243; Interrogation_Position=3149; Antisense; AATATGGTCCACAAAGTATTTACAC
>probe:Drosophila_2:1632477_s_at:555:171; Interrogation_Position=3161; Antisense; AAAGTATTTACACCCAGTCTCATCG
>probe:Drosophila_2:1632477_s_at:471:15; Interrogation_Position=3166; Antisense; ATTTACACCCAGTCTCATCGAATAA
>probe:Drosophila_2:1632477_s_at:374:497; Interrogation_Position=3177; Antisense; GTCTCATCGAATAAAATCTTGTTTG
>probe:Drosophila_2:1632477_s_at:152:359; Interrogation_Position=3213; Antisense; GCAACAACCTAATTACGATGTAGCT
>probe:Drosophila_2:1632477_s_at:87:23; Interrogation_Position=3377; Antisense; ATATAATTGAATTGAACGCAGAGCT
>probe:Drosophila_2:1632477_s_at:669:613; Interrogation_Position=3389; Antisense; TGAACGCAGAGCTATGGACACAATG
>probe:Drosophila_2:1632477_s_at:493:351; Interrogation_Position=3394; Antisense; GCAGAGCTATGGACACAATGGAAAA
>probe:Drosophila_2:1632477_s_at:242:187; Interrogation_Position=3474; Antisense; AACACACGCATACACGAACTACACT
>probe:Drosophila_2:1632477_s_at:627:383; Interrogation_Position=3489; Antisense; GAACTACACTTATGTAACATGTATT
>probe:Drosophila_2:1632477_s_at:612:423; Interrogation_Position=3528; Antisense; GAGTTGTAACTGAGGCATTAAATTA

Paste this into a BLAST search page for me
ACCTTTGAGGACAAATTTCGAATGAGAAAATCCCAAATTCAGTAAATAGAGATATTATTTCCTGTTTATCATTAAAATATGGTCCACAAAGTATTTACACAAAGTATTTACACCCAGTCTCATCGATTTACACCCAGTCTCATCGAATAAGTCTCATCGAATAAAATCTTGTTTGGCAACAACCTAATTACGATGTAGCTATATAATTGAATTGAACGCAGAGCTTGAACGCAGAGCTATGGACACAATGGCAGAGCTATGGACACAATGGAAAAAACACACGCATACACGAACTACACTGAACTACACTTATGTAACATGTATTGAGTTGTAACTGAGGCATTAAATTA

Full Affymetrix probeset data:

Annotations for 1632477_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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