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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632511_at:

>probe:Drosophila_2:1632511_at:465:691; Interrogation_Position=160; Antisense; TTTGACGTGACATCGGTGCCACCAC
>probe:Drosophila_2:1632511_at:505:535; Interrogation_Position=174; Antisense; GGTGCCACCACGTCAGTTCATCTGT
>probe:Drosophila_2:1632511_at:291:93; Interrogation_Position=188; Antisense; AGTTCATCTGTCACGATTTGGCACC
>probe:Drosophila_2:1632511_at:221:41; Interrogation_Position=193; Antisense; ATCTGTCACGATTTGGCACCGTACC
>probe:Drosophila_2:1632511_at:603:457; Interrogation_Position=202; Antisense; GATTTGGCACCGTACCACGAACCGA
>probe:Drosophila_2:1632511_at:137:391; Interrogation_Position=225; Antisense; GAAACCCGATTCACCTGACCAGGTG
>probe:Drosophila_2:1632511_at:637:129; Interrogation_Position=237; Antisense; ACCTGACCAGGTGTTCGAGTACAAG
>probe:Drosophila_2:1632511_at:724:511; Interrogation_Position=247; Antisense; GTGTTCGAGTACAAGGACTTCCTGA
>probe:Drosophila_2:1632511_at:52:223; Interrogation_Position=259; Antisense; AAGGACTTCCTGAGCTACCTGGGCA
>probe:Drosophila_2:1632511_at:560:117; Interrogation_Position=271; Antisense; AGCTACCTGGGCATACTGCAAACTC
>probe:Drosophila_2:1632511_at:723:11; Interrogation_Position=283; Antisense; ATACTGCAAACTCTGCCTTTGGACA
>probe:Drosophila_2:1632511_at:295:177; Interrogation_Position=290; Antisense; AAACTCTGCCTTTGGACACCTTGCA
>probe:Drosophila_2:1632511_at:213:559; Interrogation_Position=303; Antisense; GGACACCTTGCAGCGCCTCGAAAAG
>probe:Drosophila_2:1632511_at:32:421; Interrogation_Position=85; Antisense; GAGAAGGACAACTTAGACCAGATAG

Paste this into a BLAST search page for me
TTTGACGTGACATCGGTGCCACCACGGTGCCACCACGTCAGTTCATCTGTAGTTCATCTGTCACGATTTGGCACCATCTGTCACGATTTGGCACCGTACCGATTTGGCACCGTACCACGAACCGAGAAACCCGATTCACCTGACCAGGTGACCTGACCAGGTGTTCGAGTACAAGGTGTTCGAGTACAAGGACTTCCTGAAAGGACTTCCTGAGCTACCTGGGCAAGCTACCTGGGCATACTGCAAACTCATACTGCAAACTCTGCCTTTGGACAAAACTCTGCCTTTGGACACCTTGCAGGACACCTTGCAGCGCCTCGAAAAGGAGAAGGACAACTTAGACCAGATAG

Full Affymetrix probeset data:

Annotations for 1632511_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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