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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632530_s_at:

>probe:Drosophila_2:1632530_s_at:440:87; Interrogation_Position=1102; Antisense; AGTCGCAGCAGGTGTACCCGAGGAT
>probe:Drosophila_2:1632530_s_at:112:385; Interrogation_Position=1131; Antisense; GAACTCGGTGACTTGGACTGGACTT
>probe:Drosophila_2:1632530_s_at:41:697; Interrogation_Position=1179; Antisense; TTTCGCCAGGCTTAGCGCACAGAGA
>probe:Drosophila_2:1632530_s_at:649:357; Interrogation_Position=1214; Antisense; GCAACTCTATCCGAACCCTTTGTAA
>probe:Drosophila_2:1632530_s_at:130:299; Interrogation_Position=1310; Antisense; CCCACTTTCAATCTCTCAGTAGGTG
>probe:Drosophila_2:1632530_s_at:382:163; Interrogation_Position=1391; Antisense; AAATTTTGACGTGTTCAGCCGAACT
>probe:Drosophila_2:1632530_s_at:546:123; Interrogation_Position=1407; Antisense; AGCCGAACTTACTGATGCATCCAGG
>probe:Drosophila_2:1632530_s_at:324:347; Interrogation_Position=1423; Antisense; GCATCCAGGCACTTGCAAGCTAGAT
>probe:Drosophila_2:1632530_s_at:337:459; Interrogation_Position=1480; Antisense; GATATACTCGTAAGCCCATGTAACT
>probe:Drosophila_2:1632530_s_at:403:483; Interrogation_Position=1512; Antisense; GTATGATCGTACCACGTAACGCATT
>probe:Drosophila_2:1632530_s_at:289:129; Interrogation_Position=1530; Antisense; ACGCATTGAATGTACGCACTCGGAC
>probe:Drosophila_2:1632530_s_at:427:353; Interrogation_Position=1545; Antisense; GCACTCGGACTCAAAACTGTCGCAT
>probe:Drosophila_2:1632530_s_at:609:239; Interrogation_Position=1653; Antisense; AATAAATACTTTTGCCCTGCCTGAG
>probe:Drosophila_2:1632530_s_at:136:435; Interrogation_Position=1675; Antisense; GAGGGCTCTCATAATAATCGCAATT

Paste this into a BLAST search page for me
AGTCGCAGCAGGTGTACCCGAGGATGAACTCGGTGACTTGGACTGGACTTTTTCGCCAGGCTTAGCGCACAGAGAGCAACTCTATCCGAACCCTTTGTAACCCACTTTCAATCTCTCAGTAGGTGAAATTTTGACGTGTTCAGCCGAACTAGCCGAACTTACTGATGCATCCAGGGCATCCAGGCACTTGCAAGCTAGATGATATACTCGTAAGCCCATGTAACTGTATGATCGTACCACGTAACGCATTACGCATTGAATGTACGCACTCGGACGCACTCGGACTCAAAACTGTCGCATAATAAATACTTTTGCCCTGCCTGAGGAGGGCTCTCATAATAATCGCAATT

Full Affymetrix probeset data:

Annotations for 1632530_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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