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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632545_s_at:

>probe:Drosophila_2:1632545_s_at:112:245; Interrogation_Position=2916; Antisense; AATTCGCTTAGCTTGGCAACAGGGC
>probe:Drosophila_2:1632545_s_at:59:357; Interrogation_Position=2931; Antisense; GCAACAGGGCTGTCTTTTTGTTAAT
>probe:Drosophila_2:1632545_s_at:636:473; Interrogation_Position=2950; Antisense; GTTAATGTGCTGTCTTTGCTGTACT
>probe:Drosophila_2:1632545_s_at:585:667; Interrogation_Position=3006; Antisense; TACTTGGACGTTTACTCAACTTAAT
>probe:Drosophila_2:1632545_s_at:470:243; Interrogation_Position=3028; Antisense; AATTTTGCGCAGACTGTGCCATATT
>probe:Drosophila_2:1632545_s_at:323:599; Interrogation_Position=3069; Antisense; TGTCTACACAAACACTGTTGGCCAG
>probe:Drosophila_2:1632545_s_at:592:367; Interrogation_Position=3099; Antisense; GAATCCAAATTCGATTTGCCCAGCT
>probe:Drosophila_2:1632545_s_at:30:321; Interrogation_Position=3116; Antisense; GCCCAGCTCCTAACTTTGTAACGAA
>probe:Drosophila_2:1632545_s_at:304:635; Interrogation_Position=3163; Antisense; TCTACGCGTAACTAAGGGCTTTAAT
>probe:Drosophila_2:1632545_s_at:451:525; Interrogation_Position=3178; Antisense; GGGCTTTAATATTGTGTATCGCTAC
>probe:Drosophila_2:1632545_s_at:450:515; Interrogation_Position=3191; Antisense; GTGTATCGCTACCACTATCATGATC
>probe:Drosophila_2:1632545_s_at:515:149; Interrogation_Position=3217; Antisense; ACATCCGTTAATCTCTATATCTGCC
>probe:Drosophila_2:1632545_s_at:57:39; Interrogation_Position=3235; Antisense; ATCTGCCTTAAGTTGATGCACTAGA
>probe:Drosophila_2:1632545_s_at:457:491; Interrogation_Position=3372; Antisense; GTAACACCTAAGCTTTGTCACACAT

Paste this into a BLAST search page for me
AATTCGCTTAGCTTGGCAACAGGGCGCAACAGGGCTGTCTTTTTGTTAATGTTAATGTGCTGTCTTTGCTGTACTTACTTGGACGTTTACTCAACTTAATAATTTTGCGCAGACTGTGCCATATTTGTCTACACAAACACTGTTGGCCAGGAATCCAAATTCGATTTGCCCAGCTGCCCAGCTCCTAACTTTGTAACGAATCTACGCGTAACTAAGGGCTTTAATGGGCTTTAATATTGTGTATCGCTACGTGTATCGCTACCACTATCATGATCACATCCGTTAATCTCTATATCTGCCATCTGCCTTAAGTTGATGCACTAGAGTAACACCTAAGCTTTGTCACACAT

Full Affymetrix probeset data:

Annotations for 1632545_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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