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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632587_s_at:

>probe:Drosophila_2:1632587_s_at:465:629; Interrogation_Position=2525; Antisense; TCCAGAACCAGCGATCATGTTGCAT
>probe:Drosophila_2:1632587_s_at:678:269; Interrogation_Position=2540; Antisense; CATGTTGCATGCAGGTCGAGCGGAA
>probe:Drosophila_2:1632587_s_at:660:479; Interrogation_Position=2623; Antisense; GTTTGCTACAAGACCTGCGAGGAGA
>probe:Drosophila_2:1632587_s_at:61:133; Interrogation_Position=2647; Antisense; ACCGACAGCGACGTGTTCCTAGTAA
>probe:Drosophila_2:1632587_s_at:73:473; Interrogation_Position=2746; Antisense; GTAACCCTTCCGATCAGCAAGGTGA
>probe:Drosophila_2:1632587_s_at:270:531; Interrogation_Position=2766; Antisense; GGTGACCACGGAGACCTATGTTTCC
>probe:Drosophila_2:1632587_s_at:233:281; Interrogation_Position=2871; Antisense; GTAGACCAAGAGATCCGTAGGCGGA
>probe:Drosophila_2:1632587_s_at:167:721; Interrogation_Position=2917; Antisense; TTGACGCTTACCCTTTCGGAACACA
>probe:Drosophila_2:1632587_s_at:432:717; Interrogation_Position=2931; Antisense; TTCGGAACACATCCTTTGGCATTTT
>probe:Drosophila_2:1632587_s_at:385:569; Interrogation_Position=2948; Antisense; GGCATTTTGGAAGCGACTCTTTGAA
>probe:Drosophila_2:1632587_s_at:158:19; Interrogation_Position=2996; Antisense; ATTTGGCTCTGGTACTAACCCATTC
>probe:Drosophila_2:1632587_s_at:25:307; Interrogation_Position=3015; Antisense; CCATTCATATTAACCCGTCCAGTAA
>probe:Drosophila_2:1632587_s_at:258:493; Interrogation_Position=3036; Antisense; GTAAGATGCACGAACACTCACTTTT
>probe:Drosophila_2:1632587_s_at:395:385; Interrogation_Position=3047; Antisense; GAACACTCACTTTTTCGACTAGTTA

Paste this into a BLAST search page for me
TCCAGAACCAGCGATCATGTTGCATCATGTTGCATGCAGGTCGAGCGGAAGTTTGCTACAAGACCTGCGAGGAGAACCGACAGCGACGTGTTCCTAGTAAGTAACCCTTCCGATCAGCAAGGTGAGGTGACCACGGAGACCTATGTTTCCGTAGACCAAGAGATCCGTAGGCGGATTGACGCTTACCCTTTCGGAACACATTCGGAACACATCCTTTGGCATTTTGGCATTTTGGAAGCGACTCTTTGAAATTTGGCTCTGGTACTAACCCATTCCCATTCATATTAACCCGTCCAGTAAGTAAGATGCACGAACACTCACTTTTGAACACTCACTTTTTCGACTAGTTA

Full Affymetrix probeset data:

Annotations for 1632587_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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