FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632676_s_at:

>probe:Drosophila_2:1632676_s_at:179:619; Interrogation_Position=4300; Antisense; TGCTGCAGCGCACTGGAGGATACCT
>probe:Drosophila_2:1632676_s_at:224:589; Interrogation_Position=4313; Antisense; TGGAGGATACCTTCGCCAGCTGGTG
>probe:Drosophila_2:1632676_s_at:513:449; Interrogation_Position=4403; Antisense; GATCCTGGGAGATGATACGGCCGCC
>probe:Drosophila_2:1632676_s_at:555:25; Interrogation_Position=4417; Antisense; ATACGGCCGCCGAGGACTTGAACAT
>probe:Drosophila_2:1632676_s_at:24:151; Interrogation_Position=4432; Antisense; ACTTGAACATCACCCTTGCGATGGA
>probe:Drosophila_2:1632676_s_at:654:421; Interrogation_Position=4458; Antisense; GAGAAGACCCAGTGACCGAGACGCA
>probe:Drosophila_2:1632676_s_at:37:105; Interrogation_Position=4476; Antisense; AGACGCACACTCATCTACTTGTAGA
>probe:Drosophila_2:1632676_s_at:592:27; Interrogation_Position=4573; Antisense; ATACCTATTGCCTTGTACTTACGGA
>probe:Drosophila_2:1632676_s_at:335:493; Interrogation_Position=4604; Antisense; GTAAGCTTGATTATCGCCACGAATT
>probe:Drosophila_2:1632676_s_at:671:23; Interrogation_Position=4638; Antisense; ATATGTTCCATAGCGTACTGAGTAA
>probe:Drosophila_2:1632676_s_at:380:483; Interrogation_Position=4670; Antisense; GTATCACCTATGTTTTGTACGTCAT
>probe:Drosophila_2:1632676_s_at:300:489; Interrogation_Position=4686; Antisense; GTACGTCATGTGTTCAATTGGCAAA
>probe:Drosophila_2:1632676_s_at:383:173; Interrogation_Position=4718; Antisense; AAAGCAATTCGCAAACGCCGTGCAC
>probe:Drosophila_2:1632676_s_at:477:485; Interrogation_Position=4813; Antisense; GTAGGATTACCACATCGTACTTATA

Paste this into a BLAST search page for me
TGCTGCAGCGCACTGGAGGATACCTTGGAGGATACCTTCGCCAGCTGGTGGATCCTGGGAGATGATACGGCCGCCATACGGCCGCCGAGGACTTGAACATACTTGAACATCACCCTTGCGATGGAGAGAAGACCCAGTGACCGAGACGCAAGACGCACACTCATCTACTTGTAGAATACCTATTGCCTTGTACTTACGGAGTAAGCTTGATTATCGCCACGAATTATATGTTCCATAGCGTACTGAGTAAGTATCACCTATGTTTTGTACGTCATGTACGTCATGTGTTCAATTGGCAAAAAAGCAATTCGCAAACGCCGTGCACGTAGGATTACCACATCGTACTTATA

Full Affymetrix probeset data:

Annotations for 1632676_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720