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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632710_s_at:

>probe:Drosophila_2:1632710_s_at:68:79; Interrogation_Position=1277; Antisense; AGGATATCATGGACTCGGTGGCCCC
>probe:Drosophila_2:1632710_s_at:649:519; Interrogation_Position=1294; Antisense; GTGGCCCCGTGGATAGCCGAACTGC
>probe:Drosophila_2:1632710_s_at:547:581; Interrogation_Position=1319; Antisense; TGGCCCACTATACTGTGTGCATCTA
>probe:Drosophila_2:1632710_s_at:288:597; Interrogation_Position=1334; Antisense; TGTGCATCTACAGCGGGCAGCTAGA
>probe:Drosophila_2:1632710_s_at:630:401; Interrogation_Position=1357; Antisense; GACATTATTGTTGCCTATCCACTGA
>probe:Drosophila_2:1632710_s_at:5:411; Interrogation_Position=1380; Antisense; GACGCGCAATTATCTCAACCAACTA
>probe:Drosophila_2:1632710_s_at:44:1; Interrogation_Position=1410; Antisense; CCCCGGCTCGGACAAGTACAAGGTG
>probe:Drosophila_2:1632710_s_at:120:665; Interrogation_Position=1426; Antisense; TACAAGGTGGCTCCCCGCGAAGTGT
>probe:Drosophila_2:1632710_s_at:280:373; Interrogation_Position=1465; Antisense; GAAGTGGCCGGCTATGTCAAGCACG
>probe:Drosophila_2:1632710_s_at:124:135; Interrogation_Position=1487; Antisense; ACGCCGGACATCTTGTGGAGATCAT
>probe:Drosophila_2:1632710_s_at:35:589; Interrogation_Position=1502; Antisense; TGGAGATCATGGTCCGCAATGCCGG
>probe:Drosophila_2:1632710_s_at:29:323; Interrogation_Position=1548; Antisense; GCCCAAGTGGCTGTACATGATGATT
>probe:Drosophila_2:1632710_s_at:405:465; Interrogation_Position=1569; Antisense; GATTGATCACCTTACTCATTACAAG
>probe:Drosophila_2:1632710_s_at:654:425; Interrogation_Position=1712; Antisense; GAGAGCATTGGGTTGTTAATACTCA

Paste this into a BLAST search page for me
AGGATATCATGGACTCGGTGGCCCCGTGGCCCCGTGGATAGCCGAACTGCTGGCCCACTATACTGTGTGCATCTATGTGCATCTACAGCGGGCAGCTAGAGACATTATTGTTGCCTATCCACTGAGACGCGCAATTATCTCAACCAACTACCCCGGCTCGGACAAGTACAAGGTGTACAAGGTGGCTCCCCGCGAAGTGTGAAGTGGCCGGCTATGTCAAGCACGACGCCGGACATCTTGTGGAGATCATTGGAGATCATGGTCCGCAATGCCGGGCCCAAGTGGCTGTACATGATGATTGATTGATCACCTTACTCATTACAAGGAGAGCATTGGGTTGTTAATACTCA

Full Affymetrix probeset data:

Annotations for 1632710_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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