FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632712_s_at:

>probe:Drosophila_2:1632712_s_at:38:225; Interrogation_Position=2996; Antisense; AAGGATCATGCCGACGGTCCCGATC
>probe:Drosophila_2:1632712_s_at:18:451; Interrogation_Position=3017; Antisense; GATCCCGTGCTCATGTCAAGCATGA
>probe:Drosophila_2:1632712_s_at:468:561; Interrogation_Position=3057; Antisense; GGAAGGCCTACCAGGACAGACTCAA
>probe:Drosophila_2:1632712_s_at:325:295; Interrogation_Position=3148; Antisense; CGAGGACACGCTATTGGCCGAGAAT
>probe:Drosophila_2:1632712_s_at:522:691; Interrogation_Position=3159; Antisense; TATTGGCCGAGAATCTGCGACTGCG
>probe:Drosophila_2:1632712_s_at:579:109; Interrogation_Position=3225; Antisense; AGAAGTACCTGATGGAGCGCCAGCG
>probe:Drosophila_2:1632712_s_at:408:123; Interrogation_Position=3240; Antisense; AGCGCCAGCGGCAGAAGAGCACTTA
>probe:Drosophila_2:1632712_s_at:131:407; Interrogation_Position=3281; Antisense; GACTGAGATTCTCGTAGCCATAGAA
>probe:Drosophila_2:1632712_s_at:433:247; Interrogation_Position=3310; Antisense; AATTGCGGAGCATAAGCCTGTCATA
>probe:Drosophila_2:1632712_s_at:78:205; Interrogation_Position=3323; Antisense; AAGCCTGTCATAGTACCTATCGTCG
>probe:Drosophila_2:1632712_s_at:261:307; Interrogation_Position=3338; Antisense; CCTATCGTCGTCATCCAATTGTTTA
>probe:Drosophila_2:1632712_s_at:24:679; Interrogation_Position=3444; Antisense; TAGGCATAGTGATGGCGCCCATAGT
>probe:Drosophila_2:1632712_s_at:539:301; Interrogation_Position=3461; Antisense; CCCATAGTGCGCGAGGAGTGTTTAA
>probe:Drosophila_2:1632712_s_at:414:457; Interrogation_Position=3540; Antisense; GATATGTTTTTCGTCCAAAGCGTAA

Paste this into a BLAST search page for me
AAGGATCATGCCGACGGTCCCGATCGATCCCGTGCTCATGTCAAGCATGAGGAAGGCCTACCAGGACAGACTCAACGAGGACACGCTATTGGCCGAGAATTATTGGCCGAGAATCTGCGACTGCGAGAAGTACCTGATGGAGCGCCAGCGAGCGCCAGCGGCAGAAGAGCACTTAGACTGAGATTCTCGTAGCCATAGAAAATTGCGGAGCATAAGCCTGTCATAAAGCCTGTCATAGTACCTATCGTCGCCTATCGTCGTCATCCAATTGTTTATAGGCATAGTGATGGCGCCCATAGTCCCATAGTGCGCGAGGAGTGTTTAAGATATGTTTTTCGTCCAAAGCGTAA

Full Affymetrix probeset data:

Annotations for 1632712_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720