FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632743_a_at:

>probe:Drosophila_2:1632743_a_at:457:463; Interrogation_Position=3066; Antisense; GATTCCGAGTACTCAGAGGCATCAG
>probe:Drosophila_2:1632743_a_at:127:207; Interrogation_Position=3104; Antisense; AAGCGATGAGGACCTTGGCTCTGAT
>probe:Drosophila_2:1632743_a_at:192:439; Interrogation_Position=3174; Antisense; GAGGAAGACCGCAACCACGATTATG
>probe:Drosophila_2:1632743_a_at:625:461; Interrogation_Position=3192; Antisense; GATTATGCCGCAGATGACAAACCAC
>probe:Drosophila_2:1632743_a_at:701:257; Interrogation_Position=3214; Antisense; CACGCAACGGCAAATTCGATTCGAA
>probe:Drosophila_2:1632743_a_at:607:123; Interrogation_Position=3264; Antisense; AGCCCGTCGAAGTCGTCGAAGGACA
>probe:Drosophila_2:1632743_a_at:663:187; Interrogation_Position=3294; Antisense; AACAGCCGGGACAAGCATCATTCCT
>probe:Drosophila_2:1632743_a_at:311:161; Interrogation_Position=3352; Antisense; ACAAGGATCGCAAGCGCTCGCGGGA
>probe:Drosophila_2:1632743_a_at:207:401; Interrogation_Position=3378; Antisense; GACAGTCGCGACAATGGGCACAAGT
>probe:Drosophila_2:1632743_a_at:723:13; Interrogation_Position=3418; Antisense; ATTAGGGAGCTGTTCCTGTCGCCAA
>probe:Drosophila_2:1632743_a_at:536:517; Interrogation_Position=3447; Antisense; GTGTGGCACTCCGTTCGTAATCTAG
>probe:Drosophila_2:1632743_a_at:109:655; Interrogation_Position=3464; Antisense; TAATCTAGCTCTCCTGTTACCATTG
>probe:Drosophila_2:1632743_a_at:437:491; Interrogation_Position=3488; Antisense; GTCTATCTGTTAAAGGACCCGCCAC
>probe:Drosophila_2:1632743_a_at:335:495; Interrogation_Position=3524; Antisense; GTCACTCATTTTTGTCACGCTTCAA

Paste this into a BLAST search page for me
GATTCCGAGTACTCAGAGGCATCAGAAGCGATGAGGACCTTGGCTCTGATGAGGAAGACCGCAACCACGATTATGGATTATGCCGCAGATGACAAACCACCACGCAACGGCAAATTCGATTCGAAAGCCCGTCGAAGTCGTCGAAGGACAAACAGCCGGGACAAGCATCATTCCTACAAGGATCGCAAGCGCTCGCGGGAGACAGTCGCGACAATGGGCACAAGTATTAGGGAGCTGTTCCTGTCGCCAAGTGTGGCACTCCGTTCGTAATCTAGTAATCTAGCTCTCCTGTTACCATTGGTCTATCTGTTAAAGGACCCGCCACGTCACTCATTTTTGTCACGCTTCAA

Full Affymetrix probeset data:

Annotations for 1632743_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720