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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632768_at:

>probe:Drosophila_2:1632768_at:654:461; Interrogation_Position=123; Antisense; GATTCAGAGCACCACCTACGAGATA
>probe:Drosophila_2:1632768_at:382:689; Interrogation_Position=171; Antisense; TATTGTGTGCGATGCTGCCGAGGAT
>probe:Drosophila_2:1632768_at:219:461; Interrogation_Position=219; Antisense; GATTTTGGACATTAGCGGCTTGACA
>probe:Drosophila_2:1632768_at:706:611; Interrogation_Position=239; Antisense; TGACAGTCGATATGGCCGCAGATCT
>probe:Drosophila_2:1632768_at:293:425; Interrogation_Position=265; Antisense; GAGACCCTGTACTTCAATGGCGACA
>probe:Drosophila_2:1632768_at:392:223; Interrogation_Position=292; Antisense; AAGGTGCTGATTGATGTGCCCAACA
>probe:Drosophila_2:1632768_at:351:117; Interrogation_Position=397; Antisense; AGCTTCTGCATGTCCTTGTCAAATC
>probe:Drosophila_2:1632768_at:409:553; Interrogation_Position=426; Antisense; GGAGCTCTGGTATCCCATATTTTTG
>probe:Drosophila_2:1632768_at:724:535; Interrogation_Position=579; Antisense; GGTCCATCTGACCTCGGGAGATATA
>probe:Drosophila_2:1632768_at:357:103; Interrogation_Position=605; Antisense; AGACCTGTGCGGTGATCTTCTTTAA
>probe:Drosophila_2:1632768_at:176:643; Interrogation_Position=620; Antisense; TCTTCTTTAAGATCTACGCCTCGGG
>probe:Drosophila_2:1632768_at:229:229; Interrogation_Position=63; Antisense; AATGGAGCAGTGCATCGCCTGGATT
>probe:Drosophila_2:1632768_at:429:543; Interrogation_Position=83; Antisense; GGATTTGTGCCTTTCTATGCATTCT
>probe:Drosophila_2:1632768_at:651:681; Interrogation_Position=98; Antisense; TATGCATTCTGCAATCCCTTCGAGG

Paste this into a BLAST search page for me
GATTCAGAGCACCACCTACGAGATATATTGTGTGCGATGCTGCCGAGGATGATTTTGGACATTAGCGGCTTGACATGACAGTCGATATGGCCGCAGATCTGAGACCCTGTACTTCAATGGCGACAAAGGTGCTGATTGATGTGCCCAACAAGCTTCTGCATGTCCTTGTCAAATCGGAGCTCTGGTATCCCATATTTTTGGGTCCATCTGACCTCGGGAGATATAAGACCTGTGCGGTGATCTTCTTTAATCTTCTTTAAGATCTACGCCTCGGGAATGGAGCAGTGCATCGCCTGGATTGGATTTGTGCCTTTCTATGCATTCTTATGCATTCTGCAATCCCTTCGAGG

Full Affymetrix probeset data:

Annotations for 1632768_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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