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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632838_at:

>probe:Drosophila_2:1632838_at:637:227; Interrogation_Position=1005; Antisense; AATGGAATGTGTTCGAACAGCTCTA
>probe:Drosophila_2:1632838_at:139:515; Interrogation_Position=1013; Antisense; GTGTTCGAACAGCTCTAACGATTCA
>probe:Drosophila_2:1632838_at:703:383; Interrogation_Position=1019; Antisense; GAACAGCTCTAACGATTCATACAGC
>probe:Drosophila_2:1632838_at:631:657; Interrogation_Position=1028; Antisense; TAACGATTCATACAGCTAATTGCAT
>probe:Drosophila_2:1632838_at:578:279; Interrogation_Position=1043; Antisense; CTAATTGCATATGGTGCCAGGCACC
>probe:Drosophila_2:1632838_at:478:681; Interrogation_Position=1052; Antisense; TATGGTGCCAGGCACCTGGAGCTAC
>probe:Drosophila_2:1632838_at:67:587; Interrogation_Position=1068; Antisense; TGGAGCTACGCCTGGAGCCCTAGTA
>probe:Drosophila_2:1632838_at:27:115; Interrogation_Position=1071; Antisense; AGCTACGCCTGGAGCCCTAGTAATG
>probe:Drosophila_2:1632838_at:67:301; Interrogation_Position=1076; Antisense; CGCCTGGAGCCCTAGTAATGTTACT
>probe:Drosophila_2:1632838_at:34:553; Interrogation_Position=1081; Antisense; GGAGCCCTAGTAATGTTACTCTTTC
>probe:Drosophila_2:1632838_at:520:185; Interrogation_Position=1094; Antisense; TGTTACTCTTTCAGAAAAACCCCAG
>probe:Drosophila_2:1632838_at:493:387; Interrogation_Position=1107; Antisense; GAAAAACCCCAGAATAAATAGCGTG
>probe:Drosophila_2:1632838_at:114:675; Interrogation_Position=1125; Antisense; TAGCGTGGAACGAACGAAAATAACT
>probe:Drosophila_2:1632838_at:58:321; Interrogation_Position=990; Antisense; GCCCTCACATAAGCGAATGGAATGT

Paste this into a BLAST search page for me
AATGGAATGTGTTCGAACAGCTCTAGTGTTCGAACAGCTCTAACGATTCAGAACAGCTCTAACGATTCATACAGCTAACGATTCATACAGCTAATTGCATCTAATTGCATATGGTGCCAGGCACCTATGGTGCCAGGCACCTGGAGCTACTGGAGCTACGCCTGGAGCCCTAGTAAGCTACGCCTGGAGCCCTAGTAATGCGCCTGGAGCCCTAGTAATGTTACTGGAGCCCTAGTAATGTTACTCTTTCTGTTACTCTTTCAGAAAAACCCCAGGAAAAACCCCAGAATAAATAGCGTGTAGCGTGGAACGAACGAAAATAACTGCCCTCACATAAGCGAATGGAATGT

Full Affymetrix probeset data:

Annotations for 1632838_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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