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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632841_x_at:

>probe:Drosophila_2:1632841_x_at:21:621; Interrogation_Position=1868; Antisense; TGCTCTGGAGAGCTACGTGTTCAAC
>probe:Drosophila_2:1632841_x_at:138:339; Interrogation_Position=1869; Antisense; GCTCTGGAGAGCTACGTGTTCAACG
>probe:Drosophila_2:1632841_x_at:508:279; Interrogation_Position=1870; Antisense; CTCTGGAGAGCTACGTGTTCAACGT
>probe:Drosophila_2:1632841_x_at:490:287; Interrogation_Position=1872; Antisense; CTGGAGAGCTACGTGTTCAACGTAA
>probe:Drosophila_2:1632841_x_at:59:425; Interrogation_Position=1875; Antisense; GAGAGCTACGTGTTCAACGTAAAGC
>probe:Drosophila_2:1632841_x_at:671:135; Interrogation_Position=1882; Antisense; ACGTGTTCAACGTAAAGCAGTCCGT
>probe:Drosophila_2:1632841_x_at:254:515; Interrogation_Position=1884; Antisense; GTGTTCAACGTAAAGCAGTCCGTGG
>probe:Drosophila_2:1632841_x_at:311:335; Interrogation_Position=1886; Antisense; GTTCAACGTAAAGCAGTCCGTGGAG
>probe:Drosophila_2:1632841_x_at:639:347; Interrogation_Position=1910; Antisense; GCAGGCGCCCGCTGGCAAACTGGAC
>probe:Drosophila_2:1632841_x_at:379:557; Interrogation_Position=1958; Antisense; GGACAAGTGCAACGAAACTATTCGA
>probe:Drosophila_2:1632841_x_at:431:389; Interrogation_Position=1971; Antisense; GAAACTATTCGATGGCTGGACAGCA
>probe:Drosophila_2:1632841_x_at:90:505; Interrogation_Position=2104; Antisense; GTCCGGGAGCCAACTGTGGCCAACA
>probe:Drosophila_2:1632841_x_at:179:77; Interrogation_Position=2167; Antisense; AGGAGGTCGACTAAAGCCAATAAGA
>probe:Drosophila_2:1632841_x_at:127:257; Interrogation_Position=2182; Antisense; GCCAATAAGAAAATTATTTCGGCTT

Paste this into a BLAST search page for me
TGCTCTGGAGAGCTACGTGTTCAACGCTCTGGAGAGCTACGTGTTCAACGCTCTGGAGAGCTACGTGTTCAACGTCTGGAGAGCTACGTGTTCAACGTAAGAGAGCTACGTGTTCAACGTAAAGCACGTGTTCAACGTAAAGCAGTCCGTGTGTTCAACGTAAAGCAGTCCGTGGGTTCAACGTAAAGCAGTCCGTGGAGGCAGGCGCCCGCTGGCAAACTGGACGGACAAGTGCAACGAAACTATTCGAGAAACTATTCGATGGCTGGACAGCAGTCCGGGAGCCAACTGTGGCCAACAAGGAGGTCGACTAAAGCCAATAAGAGCCAATAAGAAAATTATTTCGGCTT

Full Affymetrix probeset data:

Annotations for 1632841_x_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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