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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632844_s_at:

>probe:Drosophila_2:1632844_s_at:442:703; Interrogation_Position=1783; Antisense; TTACTTACTTACTCACTCCACAAAA
>probe:Drosophila_2:1632844_s_at:671:393; Interrogation_Position=1824; Antisense; GAAATTAACTTAGCCAGTCCATTGA
>probe:Drosophila_2:1632844_s_at:169:267; Interrogation_Position=1838; Antisense; CAGTCCATTGAGTTCAGGGCTTTTA
>probe:Drosophila_2:1632844_s_at:8:83; Interrogation_Position=1853; Antisense; AGGGCTTTTAGAGTTGCCTCTGCGT
>probe:Drosophila_2:1632844_s_at:580:623; Interrogation_Position=1873; Antisense; TGCGTCTGTGTTTCTGTATTTCCTA
>probe:Drosophila_2:1632844_s_at:550:687; Interrogation_Position=1889; Antisense; TATTTCCTACGTTTACACTCTACAC
>probe:Drosophila_2:1632844_s_at:483:67; Interrogation_Position=2033; Antisense; ATGGCAGTCGCTGAACAGGATTCCC
>probe:Drosophila_2:1632844_s_at:702:77; Interrogation_Position=2049; Antisense; AGGATTCCCCATTCAAGCGATCTTC
>probe:Drosophila_2:1632844_s_at:232:207; Interrogation_Position=2063; Antisense; AAGCGATCTTCAAGCTAGTTTCCCC
>probe:Drosophila_2:1632844_s_at:221:653; Interrogation_Position=2078; Antisense; TAGTTTCCCCTCAGCATTTATTTAC
>probe:Drosophila_2:1632844_s_at:313:515; Interrogation_Position=2103; Antisense; GTGTTTCCGTTTCGCTCAAAGATAC
>probe:Drosophila_2:1632844_s_at:381:275; Interrogation_Position=2166; Antisense; CTTTTGACCACCCTTTTGTGATAAG
>probe:Drosophila_2:1632844_s_at:282:685; Interrogation_Position=2180; Antisense; TTTGTGATAAGCTCTCGTCGTCCTT
>probe:Drosophila_2:1632844_s_at:464:501; Interrogation_Position=2196; Antisense; GTCGTCCTTCTATTTACTTCTGTTT

Paste this into a BLAST search page for me
TTACTTACTTACTCACTCCACAAAAGAAATTAACTTAGCCAGTCCATTGACAGTCCATTGAGTTCAGGGCTTTTAAGGGCTTTTAGAGTTGCCTCTGCGTTGCGTCTGTGTTTCTGTATTTCCTATATTTCCTACGTTTACACTCTACACATGGCAGTCGCTGAACAGGATTCCCAGGATTCCCCATTCAAGCGATCTTCAAGCGATCTTCAAGCTAGTTTCCCCTAGTTTCCCCTCAGCATTTATTTACGTGTTTCCGTTTCGCTCAAAGATACCTTTTGACCACCCTTTTGTGATAAGTTTGTGATAAGCTCTCGTCGTCCTTGTCGTCCTTCTATTTACTTCTGTTT

Full Affymetrix probeset data:

Annotations for 1632844_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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