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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632865_s_at:

>probe:Drosophila_2:1632865_s_at:295:581; Interrogation_Position=1003; Antisense; TGGCCGAGACCATCCAGGTGAACGA
>probe:Drosophila_2:1632865_s_at:422:331; Interrogation_Position=1044; Antisense; GCGGCGCACTTGTCGATGGACTCGA
>probe:Drosophila_2:1632865_s_at:499:439; Interrogation_Position=1058; Antisense; GATGGACTCGAACCTAATGGATCGT
>probe:Drosophila_2:1632865_s_at:329:229; Interrogation_Position=1073; Antisense; AATGGATCGTCGCTTCAGGGACCTC
>probe:Drosophila_2:1632865_s_at:18:269; Interrogation_Position=1088; Antisense; CAGGGACCTCAACGCGTACCAGCAG
>probe:Drosophila_2:1632865_s_at:513:209; Interrogation_Position=1149; Antisense; AAGCAATCTTCGCAGAATCCCATGG
>probe:Drosophila_2:1632865_s_at:702:307; Interrogation_Position=1168; Antisense; CCATGGAGACCATTGTGGTGGCCAC
>probe:Drosophila_2:1632865_s_at:448:667; Interrogation_Position=1260; Antisense; TACTAGATTACTAAGCCCCTTGGCG
>probe:Drosophila_2:1632865_s_at:486:173; Interrogation_Position=1293; Antisense; AAAGCCCTCTTCGATACTATAATTC
>probe:Drosophila_2:1632865_s_at:148:567; Interrogation_Position=1362; Antisense; GGCAACTTCTTCTGCGTTTTTATTC
>probe:Drosophila_2:1632865_s_at:633:519; Interrogation_Position=873; Antisense; GTGGATACTTTGTTCAATCCTCGCA
>probe:Drosophila_2:1632865_s_at:481:541; Interrogation_Position=899; Antisense; GGATTCCAATGATATTCTGACCACC
>probe:Drosophila_2:1632865_s_at:189:533; Interrogation_Position=950; Antisense; GGTGGAGGTCCAGGCGTATAACAAT
>probe:Drosophila_2:1632865_s_at:80:663; Interrogation_Position=968; Antisense; TAACAATGCCGCCTACGTTCCGGAA

Paste this into a BLAST search page for me
TGGCCGAGACCATCCAGGTGAACGAGCGGCGCACTTGTCGATGGACTCGAGATGGACTCGAACCTAATGGATCGTAATGGATCGTCGCTTCAGGGACCTCCAGGGACCTCAACGCGTACCAGCAGAAGCAATCTTCGCAGAATCCCATGGCCATGGAGACCATTGTGGTGGCCACTACTAGATTACTAAGCCCCTTGGCGAAAGCCCTCTTCGATACTATAATTCGGCAACTTCTTCTGCGTTTTTATTCGTGGATACTTTGTTCAATCCTCGCAGGATTCCAATGATATTCTGACCACCGGTGGAGGTCCAGGCGTATAACAATTAACAATGCCGCCTACGTTCCGGAA

Full Affymetrix probeset data:

Annotations for 1632865_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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