FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632888_s_at:

>probe:Drosophila_2:1632888_s_at:306:87; Interrogation_Position=1636; Antisense; AGTCACATCGACTGGGTCCGCGGTT
>probe:Drosophila_2:1632888_s_at:722:625; Interrogation_Position=1690; Antisense; TGCCGCAGCACCAGTTCGACGACTA
>probe:Drosophila_2:1632888_s_at:270:637; Interrogation_Position=1705; Antisense; TCGACGACTATCTGTTCGAGTCCTG
>probe:Drosophila_2:1632888_s_at:565:87; Interrogation_Position=1723; Antisense; AGTCCTGCCACTACCTGGAGACAAA
>probe:Drosophila_2:1632888_s_at:651:587; Interrogation_Position=1738; Antisense; TGGAGACAAACTACTTTGCCGCCAC
>probe:Drosophila_2:1632888_s_at:718:27; Interrogation_Position=1763; Antisense; ATACCGCACTGCCATGGTCGAGAGC
>probe:Drosophila_2:1632888_s_at:132:591; Interrogation_Position=1777; Antisense; TGGTCGAGAGCAGCTCGCACGAGTT
>probe:Drosophila_2:1632888_s_at:526:417; Interrogation_Position=1836; Antisense; GAGCTGCACGAGATGGAGCCGCCCA
>probe:Drosophila_2:1632888_s_at:582:415; Interrogation_Position=1851; Antisense; GAGCCGCCCAGTGTCATCTGCAAGG
>probe:Drosophila_2:1632888_s_at:155:143; Interrogation_Position=1892; Antisense; ACTGGTTTCCAGTCACCCTGGTCAT
>probe:Drosophila_2:1632888_s_at:1:321; Interrogation_Position=1937; Antisense; GCCGCCGCGGTACCAATTCGAGTAC
>probe:Drosophila_2:1632888_s_at:134:535; Interrogation_Position=1991; Antisense; GGTGCAGACGGAGCTCACCGTCGAA
>probe:Drosophila_2:1632888_s_at:179:651; Interrogation_Position=2005; Antisense; TCACCGTCGAATCGCTGGCCAAGAT
>probe:Drosophila_2:1632888_s_at:666:71; Interrogation_Position=2127; Antisense; AGGCAGCAGCAGAAGAGCTCCTCCG

Paste this into a BLAST search page for me
AGTCACATCGACTGGGTCCGCGGTTTGCCGCAGCACCAGTTCGACGACTATCGACGACTATCTGTTCGAGTCCTGAGTCCTGCCACTACCTGGAGACAAATGGAGACAAACTACTTTGCCGCCACATACCGCACTGCCATGGTCGAGAGCTGGTCGAGAGCAGCTCGCACGAGTTGAGCTGCACGAGATGGAGCCGCCCAGAGCCGCCCAGTGTCATCTGCAAGGACTGGTTTCCAGTCACCCTGGTCATGCCGCCGCGGTACCAATTCGAGTACGGTGCAGACGGAGCTCACCGTCGAATCACCGTCGAATCGCTGGCCAAGATAGGCAGCAGCAGAAGAGCTCCTCCG

Full Affymetrix probeset data:

Annotations for 1632888_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720