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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632901_s_at:

>probe:Drosophila_2:1632901_s_at:478:363; Interrogation_Position=2003; Antisense; GAATTAACTGCCTGATCGACCAACC
>probe:Drosophila_2:1632901_s_at:386:451; Interrogation_Position=2016; Antisense; GATCGACCAACCAGTGACCACAATT
>probe:Drosophila_2:1632901_s_at:718:1; Interrogation_Position=2054; Antisense; ATTCCAAAGGGCCAACCAGAACTGA
>probe:Drosophila_2:1632901_s_at:169:127; Interrogation_Position=2068; Antisense; ACCAGAACTGAGAGCATTCCTACTA
>probe:Drosophila_2:1632901_s_at:444:341; Interrogation_Position=2081; Antisense; GCATTCCTACTAAGGTGCAACCGGA
>probe:Drosophila_2:1632901_s_at:233:105; Interrogation_Position=2112; Antisense; AGACGAATTTTCAAGCACTGCCAGA
>probe:Drosophila_2:1632901_s_at:199:393; Interrogation_Position=2135; Antisense; GAAAGCGTAATGCTCGTCGTCAAAA
>probe:Drosophila_2:1632901_s_at:96:179; Interrogation_Position=2158; Antisense; AAAATTACCACATATTCCTCCGACT
>probe:Drosophila_2:1632901_s_at:366:7; Interrogation_Position=2171; Antisense; ATTCCTCCGACTTTGATAGCGGCGA
>probe:Drosophila_2:1632901_s_at:588:35; Interrogation_Position=2206; Antisense; ATCGTGGGCAACTCTTTAAGCGGCA
>probe:Drosophila_2:1632901_s_at:727:197; Interrogation_Position=2231; Antisense; AACGTGCCAAATTATGTGCGCCCAT
>probe:Drosophila_2:1632901_s_at:116:705; Interrogation_Position=2242; Antisense; TTATGTGCGCCCATCAAGCCACAAA
>probe:Drosophila_2:1632901_s_at:708:105; Interrogation_Position=2388; Antisense; AGAAATTCATTCAGATCCATCATCA
>probe:Drosophila_2:1632901_s_at:529:497; Interrogation_Position=2442; Antisense; GTCTGAAACTGGCAAGCTATTTTTA

Paste this into a BLAST search page for me
GAATTAACTGCCTGATCGACCAACCGATCGACCAACCAGTGACCACAATTATTCCAAAGGGCCAACCAGAACTGAACCAGAACTGAGAGCATTCCTACTAGCATTCCTACTAAGGTGCAACCGGAAGACGAATTTTCAAGCACTGCCAGAGAAAGCGTAATGCTCGTCGTCAAAAAAAATTACCACATATTCCTCCGACTATTCCTCCGACTTTGATAGCGGCGAATCGTGGGCAACTCTTTAAGCGGCAAACGTGCCAAATTATGTGCGCCCATTTATGTGCGCCCATCAAGCCACAAAAGAAATTCATTCAGATCCATCATCAGTCTGAAACTGGCAAGCTATTTTTA

Full Affymetrix probeset data:

Annotations for 1632901_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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