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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632913_at:

>probe:Drosophila_2:1632913_at:119:161; Interrogation_Position=1203; Antisense; ACAAGCATCTGCATTTGGGCATCAA
>probe:Drosophila_2:1632913_at:591:97; Interrogation_Position=1242; Antisense; AGATCTGCGGTAATGCCTATGCCCA
>probe:Drosophila_2:1632913_at:390:71; Interrogation_Position=1266; Antisense; AGGCGGCAGGTCTATCCGCTCATAT
>probe:Drosophila_2:1632913_at:497:207; Interrogation_Position=1301; Antisense; AAGCTCCAGGCGTCCGTAAATGCGA
>probe:Drosophila_2:1632913_at:630:505; Interrogation_Position=1332; Antisense; GTGCCGAGGCGGAACCCATCGAGAT
>probe:Drosophila_2:1632913_at:211:271; Interrogation_Position=1348; Antisense; CATCGAGATGCTTTTCACCTACTGA
>probe:Drosophila_2:1632913_at:568:701; Interrogation_Position=1359; Antisense; TTTTCACCTACTGACCGAACTGAGT
>probe:Drosophila_2:1632913_at:667:383; Interrogation_Position=1375; Antisense; GAACTGAGTGGAAACCTCCTGTCGC
>probe:Drosophila_2:1632913_at:403:503; Interrogation_Position=1395; Antisense; GTCGCCTTAAGCTCTATTTCCATAT
>probe:Drosophila_2:1632913_at:59:215; Interrogation_Position=1486; Antisense; AATGTTTATGGACACCCGACTCTTT
>probe:Drosophila_2:1632913_at:663:129; Interrogation_Position=1504; Antisense; ACTCTTTCGTTCCAACTTTTCACAT
>probe:Drosophila_2:1632913_at:479:401; Interrogation_Position=1556; Antisense; GACATTTTCCAATCTAAGGCCGCAA
>probe:Drosophila_2:1632913_at:588:315; Interrogation_Position=1608; Antisense; GCCTTCCATTTCTGTGTCTCAAAAA
>probe:Drosophila_2:1632913_at:596:211; Interrogation_Position=1702; Antisense; AAGACCTTGCTTCCGACTAGGACAA

Paste this into a BLAST search page for me
ACAAGCATCTGCATTTGGGCATCAAAGATCTGCGGTAATGCCTATGCCCAAGGCGGCAGGTCTATCCGCTCATATAAGCTCCAGGCGTCCGTAAATGCGAGTGCCGAGGCGGAACCCATCGAGATCATCGAGATGCTTTTCACCTACTGATTTTCACCTACTGACCGAACTGAGTGAACTGAGTGGAAACCTCCTGTCGCGTCGCCTTAAGCTCTATTTCCATATAATGTTTATGGACACCCGACTCTTTACTCTTTCGTTCCAACTTTTCACATGACATTTTCCAATCTAAGGCCGCAAGCCTTCCATTTCTGTGTCTCAAAAAAAGACCTTGCTTCCGACTAGGACAA

Full Affymetrix probeset data:

Annotations for 1632913_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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