FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632932_a_at:

>probe:Drosophila_2:1632932_a_at:701:141; Interrogation_Position=3580; Antisense; ACGGCCGATGAGTATGCAGCGCATT
>probe:Drosophila_2:1632932_a_at:349:243; Interrogation_Position=3610; Antisense; AATTTACTGCTGTAAGCGGAAACGG
>probe:Drosophila_2:1632932_a_at:487:213; Interrogation_Position=3642; Antisense; AAGAGGAGCGGCATCACACCGAACA
>probe:Drosophila_2:1632932_a_at:318:157; Interrogation_Position=3657; Antisense; ACACCGAACACATTCTCATGCATAA
>probe:Drosophila_2:1632932_a_at:308:155; Interrogation_Position=3712; Antisense; ACAGACACATGCGTGCACACATTGA
>probe:Drosophila_2:1632932_a_at:654:493; Interrogation_Position=3739; Antisense; GTCAACGTGAATCATGGCCATGCAT
>probe:Drosophila_2:1632932_a_at:512:579; Interrogation_Position=3754; Antisense; GGCCATGCATATAATCAGCGAATTC
>probe:Drosophila_2:1632932_a_at:677:29; Interrogation_Position=3801; Antisense; ATACTCAGACGGCAGATGGATGTTG
>probe:Drosophila_2:1632932_a_at:595:487; Interrogation_Position=3852; Antisense; GTACGCATACACACTACTCGTAGGT
>probe:Drosophila_2:1632932_a_at:252:705; Interrogation_Position=3955; Antisense; TTATGTTTAGGACACGGCACGAGCA
>probe:Drosophila_2:1632932_a_at:572:565; Interrogation_Position=3970; Antisense; GGCACGAGCAAGCAGCAATTTTTGT
>probe:Drosophila_2:1632932_a_at:272:1; Interrogation_Position=4034; Antisense; TGTAACTTACCGATAGCCGTAACCG
>probe:Drosophila_2:1632932_a_at:171:317; Interrogation_Position=4049; Antisense; GCCGTAACCGAACTAATATCTAATT
>probe:Drosophila_2:1632932_a_at:477:13; Interrogation_Position=4079; Antisense; ATTACCTAAGCTCATCATTCACAAC

Paste this into a BLAST search page for me
ACGGCCGATGAGTATGCAGCGCATTAATTTACTGCTGTAAGCGGAAACGGAAGAGGAGCGGCATCACACCGAACAACACCGAACACATTCTCATGCATAAACAGACACATGCGTGCACACATTGAGTCAACGTGAATCATGGCCATGCATGGCCATGCATATAATCAGCGAATTCATACTCAGACGGCAGATGGATGTTGGTACGCATACACACTACTCGTAGGTTTATGTTTAGGACACGGCACGAGCAGGCACGAGCAAGCAGCAATTTTTGTTGTAACTTACCGATAGCCGTAACCGGCCGTAACCGAACTAATATCTAATTATTACCTAAGCTCATCATTCACAAC

Full Affymetrix probeset data:

Annotations for 1632932_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720