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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632974_s_at:

>probe:Drosophila_2:1632974_s_at:677:575; Interrogation_Position=4899; Antisense; GGCGAGGTCATCCAAAGACAATAGC
>probe:Drosophila_2:1632974_s_at:723:239; Interrogation_Position=4918; Antisense; AATAGCGACCTGCTCGATTCCGGTG
>probe:Drosophila_2:1632974_s_at:102:707; Interrogation_Position=4935; Antisense; TTCCGGTGCCCGAAAAACTCGATAG
>probe:Drosophila_2:1632974_s_at:345:679; Interrogation_Position=5010; Antisense; TAGTCTGTTCAGAGTATCGCTTACT
>probe:Drosophila_2:1632974_s_at:720:341; Interrogation_Position=5042; Antisense; GCTTCTCAGTTAGGCTTCGATTCGA
>probe:Drosophila_2:1632974_s_at:307:275; Interrogation_Position=5056; Antisense; CTTCGATTCGAATTTGTTCTGTGCA
>probe:Drosophila_2:1632974_s_at:67:365; Interrogation_Position=5065; Antisense; GAATTTGTTCTGTGCATGTCGAAAA
>probe:Drosophila_2:1632974_s_at:73:653; Interrogation_Position=5157; Antisense; TAATTACGCGTAGCAAGGAGCCTGA
>probe:Drosophila_2:1632974_s_at:186:109; Interrogation_Position=5168; Antisense; AGCAAGGAGCCTGATATTCGAAACA
>probe:Drosophila_2:1632974_s_at:72:37; Interrogation_Position=5284; Antisense; ATCATGTACATGTTTCGAAGACCTT
>probe:Drosophila_2:1632974_s_at:262:635; Interrogation_Position=5298; Antisense; TCGAAGACCTTGTTTATGTATAATC
>probe:Drosophila_2:1632974_s_at:328:483; Interrogation_Position=5315; Antisense; GTATAATCTATAGAGTCTGTCGAGA
>probe:Drosophila_2:1632974_s_at:667:501; Interrogation_Position=5333; Antisense; GTCGAGATTGCAGACCCATATGAAT
>probe:Drosophila_2:1632974_s_at:387:17; Interrogation_Position=5372; Antisense; ATTTAATCATATTCACACCCAAGTG

Paste this into a BLAST search page for me
GGCGAGGTCATCCAAAGACAATAGCAATAGCGACCTGCTCGATTCCGGTGTTCCGGTGCCCGAAAAACTCGATAGTAGTCTGTTCAGAGTATCGCTTACTGCTTCTCAGTTAGGCTTCGATTCGACTTCGATTCGAATTTGTTCTGTGCAGAATTTGTTCTGTGCATGTCGAAAATAATTACGCGTAGCAAGGAGCCTGAAGCAAGGAGCCTGATATTCGAAACAATCATGTACATGTTTCGAAGACCTTTCGAAGACCTTGTTTATGTATAATCGTATAATCTATAGAGTCTGTCGAGAGTCGAGATTGCAGACCCATATGAATATTTAATCATATTCACACCCAAGTG

Full Affymetrix probeset data:

Annotations for 1632974_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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