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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632983_s_at:

>probe:Drosophila_2:1632983_s_at:270:525; Interrogation_Position=1878; Antisense; GGGCATCGATATCCGCGAGCCCGTT
>probe:Drosophila_2:1632983_s_at:407:667; Interrogation_Position=1936; Antisense; TACAGCGACGCGGACATTGTCCTCA
>probe:Drosophila_2:1632983_s_at:584:5; Interrogation_Position=1951; Antisense; ATTGTCCTCAGCTCCGACTGGGTAC
>probe:Drosophila_2:1632983_s_at:291:405; Interrogation_Position=1966; Antisense; GACTGGGTACCACCGAAAACCATTG
>probe:Drosophila_2:1632983_s_at:462:3; Interrogation_Position=1987; Antisense; ATTGTGCCGACGCACTTCAGCGAGT
>probe:Drosophila_2:1632983_s_at:123:309; Interrogation_Position=2037; Antisense; CCAGAGTCTCGACGCCGGCACAGGA
>probe:Drosophila_2:1632983_s_at:20:523; Interrogation_Position=2070; Antisense; GGGCGTCCGTAAGAAGACCTCAAGC
>probe:Drosophila_2:1632983_s_at:123:207; Interrogation_Position=2091; Antisense; AAGCGTGAGCTTCAGCGTCGACGAC
>probe:Drosophila_2:1632983_s_at:284:335; Interrogation_Position=2146; Antisense; GCTGCACTGGCTGTCACAGACAAGC
>probe:Drosophila_2:1632983_s_at:383:495; Interrogation_Position=2158; Antisense; GTCACAGACAAGCAGGCCGACAAGA
>probe:Drosophila_2:1632983_s_at:83:99; Interrogation_Position=2189; Antisense; AGATGCTTAAACGTCTCTCATACCC
>probe:Drosophila_2:1632983_s_at:81:379; Interrogation_Position=2279; Antisense; GAAGCCTGAACAAGTCGGGAGACAC
>probe:Drosophila_2:1632983_s_at:274:551; Interrogation_Position=2296; Antisense; GGAGACACAGACTCGGCGCCCAACA
>probe:Drosophila_2:1632983_s_at:111:531; Interrogation_Position=2322; Antisense; GGGTGACTCCAACCAAAGTGTATTT

Paste this into a BLAST search page for me
GGGCATCGATATCCGCGAGCCCGTTTACAGCGACGCGGACATTGTCCTCAATTGTCCTCAGCTCCGACTGGGTACGACTGGGTACCACCGAAAACCATTGATTGTGCCGACGCACTTCAGCGAGTCCAGAGTCTCGACGCCGGCACAGGAGGGCGTCCGTAAGAAGACCTCAAGCAAGCGTGAGCTTCAGCGTCGACGACGCTGCACTGGCTGTCACAGACAAGCGTCACAGACAAGCAGGCCGACAAGAAGATGCTTAAACGTCTCTCATACCCGAAGCCTGAACAAGTCGGGAGACACGGAGACACAGACTCGGCGCCCAACAGGGTGACTCCAACCAAAGTGTATTT

Full Affymetrix probeset data:

Annotations for 1632983_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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