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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632985_at:

>probe:Drosophila_2:1632985_at:260:341; Interrogation_Position=1014; Antisense; GCTTTGATCGATACGGAATCTCCGC
>probe:Drosophila_2:1632985_at:277:357; Interrogation_Position=1055; Antisense; GCACAACTTGGATCTGAACCGCAGT
>probe:Drosophila_2:1632985_at:403:349; Interrogation_Position=1075; Antisense; GCAGTTGCACCTTCGTTATTTTATG
>probe:Drosophila_2:1632985_at:642:613; Interrogation_Position=1098; Antisense; TGAACCTCGGTTTTGGCATTTAAAG
>probe:Drosophila_2:1632985_at:316:367; Interrogation_Position=1190; Antisense; GAATCCGACGAGAACGAGTGCCTTA
>probe:Drosophila_2:1632985_at:710:431; Interrogation_Position=1205; Antisense; GAGTGCCTTATGACGTCCTAGTTAT
>probe:Drosophila_2:1632985_at:683:291; Interrogation_Position=1247; Antisense; CGTTTCCCCAGATTTATATACCTCG
>probe:Drosophila_2:1632985_at:181:687; Interrogation_Position=1261; Antisense; TATATACCTCGACAGACCTAGCTTT
>probe:Drosophila_2:1632985_at:318:103; Interrogation_Position=1274; Antisense; AGACCTAGCTTTGTTGTACGCATAG
>probe:Drosophila_2:1632985_at:383:711; Interrogation_Position=1317; Antisense; TTAATTGCAACCATGGCGTACCTAA
>probe:Drosophila_2:1632985_at:239:5; Interrogation_Position=1417; Antisense; ATTGTTACCCATTAGAGTGGCCTAG
>probe:Drosophila_2:1632985_at:637:83; Interrogation_Position=1432; Antisense; AGTGGCCTAGTGAGCCAGCTTTCAA
>probe:Drosophila_2:1632985_at:511:95; Interrogation_Position=1466; Antisense; AGATCGAAAACATCTCCTCCTTTTT
>probe:Drosophila_2:1632985_at:357:363; Interrogation_Position=1513; Antisense; GCAATTTTCATCACCTTCACATGTA

Paste this into a BLAST search page for me
GCTTTGATCGATACGGAATCTCCGCGCACAACTTGGATCTGAACCGCAGTGCAGTTGCACCTTCGTTATTTTATGTGAACCTCGGTTTTGGCATTTAAAGGAATCCGACGAGAACGAGTGCCTTAGAGTGCCTTATGACGTCCTAGTTATCGTTTCCCCAGATTTATATACCTCGTATATACCTCGACAGACCTAGCTTTAGACCTAGCTTTGTTGTACGCATAGTTAATTGCAACCATGGCGTACCTAAATTGTTACCCATTAGAGTGGCCTAGAGTGGCCTAGTGAGCCAGCTTTCAAAGATCGAAAACATCTCCTCCTTTTTGCAATTTTCATCACCTTCACATGTA

Full Affymetrix probeset data:

Annotations for 1632985_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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