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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633019_a_at:

>probe:Drosophila_2:1633019_a_at:202:519; Interrogation_Position=1021; Antisense; GTGGTGACATCGGATACAGCATTAC
>probe:Drosophila_2:1633019_a_at:302:253; Interrogation_Position=1063; Antisense; CAAGCAAGGTTGTTCTTCTACGCAA
>probe:Drosophila_2:1633019_a_at:204:711; Interrogation_Position=1078; Antisense; TTCTACGCAACATGGTAGGACCCGG
>probe:Drosophila_2:1633019_a_at:406:103; Interrogation_Position=1136; Antisense; AGACGAATGCAACACCAAGTACGGG
>probe:Drosophila_2:1633019_a_at:180:515; Interrogation_Position=1171; Antisense; GTGTAATCATTCACGAATCGTTCGG
>probe:Drosophila_2:1633019_a_at:180:237; Interrogation_Position=1186; Antisense; AATCGTTCGGAACTGTGCCAGAAGA
>probe:Drosophila_2:1633019_a_at:81:475; Interrogation_Position=1232; Antisense; GTTTAGGCGGATCGAAAGTGCAATT
>probe:Drosophila_2:1633019_a_at:303:325; Interrogation_Position=1260; Antisense; GCTGTAGTGGACCTTAATGGACGTT
>probe:Drosophila_2:1633019_a_at:95:479; Interrogation_Position=1414; Antisense; GTTTACCGCACAGAACTAGTCTTGT
>probe:Drosophila_2:1633019_a_at:316:519; Interrogation_Position=880; Antisense; GTGGTGGACGGATCATACACGAAAA
>probe:Drosophila_2:1633019_a_at:467:675; Interrogation_Position=925; Antisense; TAGCATTGTCGCCACCTTCTATTGG
>probe:Drosophila_2:1633019_a_at:512:123; Interrogation_Position=938; Antisense; ACCTTCTATTGGCTCCCAAATAGGA
>probe:Drosophila_2:1633019_a_at:85:165; Interrogation_Position=955; Antisense; AAATAGGAACAAGTCCCAGCCACAA
>probe:Drosophila_2:1633019_a_at:286:631; Interrogation_Position=992; Antisense; TCCCCAGATGGTAGACACGGCGGCT

Paste this into a BLAST search page for me
GTGGTGACATCGGATACAGCATTACCAAGCAAGGTTGTTCTTCTACGCAATTCTACGCAACATGGTAGGACCCGGAGACGAATGCAACACCAAGTACGGGGTGTAATCATTCACGAATCGTTCGGAATCGTTCGGAACTGTGCCAGAAGAGTTTAGGCGGATCGAAAGTGCAATTGCTGTAGTGGACCTTAATGGACGTTGTTTACCGCACAGAACTAGTCTTGTGTGGTGGACGGATCATACACGAAAATAGCATTGTCGCCACCTTCTATTGGACCTTCTATTGGCTCCCAAATAGGAAAATAGGAACAAGTCCCAGCCACAATCCCCAGATGGTAGACACGGCGGCT

Full Affymetrix probeset data:

Annotations for 1633019_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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