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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633022_at:

>probe:Drosophila_2:1633022_at:707:55; Interrogation_Position=1038; Antisense; ATGAGGCCTTAGTGGTGTACGACAA
>probe:Drosophila_2:1633022_at:171:179; Interrogation_Position=1091; Antisense; AAACTTCATGGCCTGGAGTACCCAA
>probe:Drosophila_2:1633022_at:362:55; Interrogation_Position=1148; Antisense; ATGAGCTCAGCTCGCATGGACACAT
>probe:Drosophila_2:1633022_at:294:559; Interrogation_Position=1165; Antisense; GGACACATCCTTCATAGACAAGCGA
>probe:Drosophila_2:1633022_at:191:223; Interrogation_Position=1196; Antisense; AAGGATGCCATCTGCAATGTTCCCT
>probe:Drosophila_2:1633022_at:581:405; Interrogation_Position=1269; Antisense; GACTGTTCATTGTGCTCTCAGCGAA
>probe:Drosophila_2:1633022_at:312:191; Interrogation_Position=1316; Antisense; AACATATTCTCTTGCTGGTCGGGAC
>probe:Drosophila_2:1633022_at:259:527; Interrogation_Position=1336; Antisense; GGGACTGATCGACGTCTACCTTCTG
>probe:Drosophila_2:1633022_at:235:143; Interrogation_Position=1371; Antisense; ACTGTGGCTACGTCAAGTATGCGGA
>probe:Drosophila_2:1633022_at:219:101; Interrogation_Position=1401; Antisense; AGAGTGCTCAATTGGCCATTCGTAC
>probe:Drosophila_2:1633022_at:102:513; Interrogation_Position=938; Antisense; GTGAGCAACTGCGTCAACCAGGATC
>probe:Drosophila_2:1633022_at:116:119; Interrogation_Position=963; Antisense; AGCTCTGGCGTCTCTTCGACATAAT
>probe:Drosophila_2:1633022_at:13:31; Interrogation_Position=983; Antisense; ATAATTCCCGGCTTGGATTACTGCC
>probe:Drosophila_2:1633022_at:336:13; Interrogation_Position=999; Antisense; ATTACTGCCAAATCATGCGCGAACA

Paste this into a BLAST search page for me
ATGAGGCCTTAGTGGTGTACGACAAAAACTTCATGGCCTGGAGTACCCAAATGAGCTCAGCTCGCATGGACACATGGACACATCCTTCATAGACAAGCGAAAGGATGCCATCTGCAATGTTCCCTGACTGTTCATTGTGCTCTCAGCGAAAACATATTCTCTTGCTGGTCGGGACGGGACTGATCGACGTCTACCTTCTGACTGTGGCTACGTCAAGTATGCGGAAGAGTGCTCAATTGGCCATTCGTACGTGAGCAACTGCGTCAACCAGGATCAGCTCTGGCGTCTCTTCGACATAATATAATTCCCGGCTTGGATTACTGCCATTACTGCCAAATCATGCGCGAACA

Full Affymetrix probeset data:

Annotations for 1633022_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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