FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633032_s_at:

>probe:Drosophila_2:1633032_s_at:445:159; Interrogation_Position=5090; Antisense; ACAAAATCGGTTGCTGGTATATCAA
>probe:Drosophila_2:1633032_s_at:471:697; Interrogation_Position=5117; Antisense; TTTAGCATCGTTACCTCTGACTTGT
>probe:Drosophila_2:1633032_s_at:390:245; Interrogation_Position=5145; Antisense; AATTAGACAAATATCCTTCCCACGG
>probe:Drosophila_2:1633032_s_at:486:225; Interrogation_Position=5171; Antisense; AAGGAGCGTCACACAATGATTGCAT
>probe:Drosophila_2:1633032_s_at:474:687; Interrogation_Position=5229; Antisense; TATTAACTCGGTTGGAGACTCGCAT
>probe:Drosophila_2:1633032_s_at:708:551; Interrogation_Position=5242; Antisense; GGAGACTCGCATGTATTATTAGCAA
>probe:Drosophila_2:1633032_s_at:122:727; Interrogation_Position=5303; Antisense; TTGGCTTAGACCTATCAAATCGAAG
>probe:Drosophila_2:1633032_s_at:89:257; Interrogation_Position=5318; Antisense; CAAATCGAAGCAATCCCAGCGTGGA
>probe:Drosophila_2:1633032_s_at:649:489; Interrogation_Position=5359; Antisense; GTAAACTATTTAACTTCAACTGGCG
>probe:Drosophila_2:1633032_s_at:473:1; Interrogation_Position=5459; Antisense; ATCGTTTTAAGCACTTCAACCGGAG
>probe:Drosophila_2:1633032_s_at:276:355; Interrogation_Position=5469; Antisense; GCACTTCAACCGGAGCTTTCTTTTA
>probe:Drosophila_2:1633032_s_at:242:233; Interrogation_Position=5499; Antisense; AATGCTTCGCGTTTGAAGTGGCCGC
>probe:Drosophila_2:1633032_s_at:3:221; Interrogation_Position=5514; Antisense; AAGTGGCCGCTGTAAGTTTGCCTTC
>probe:Drosophila_2:1633032_s_at:670:479; Interrogation_Position=5529; Antisense; GTTTGCCTTCTTTGTACTTGTAGTC

Paste this into a BLAST search page for me
ACAAAATCGGTTGCTGGTATATCAATTTAGCATCGTTACCTCTGACTTGTAATTAGACAAATATCCTTCCCACGGAAGGAGCGTCACACAATGATTGCATTATTAACTCGGTTGGAGACTCGCATGGAGACTCGCATGTATTATTAGCAATTGGCTTAGACCTATCAAATCGAAGCAAATCGAAGCAATCCCAGCGTGGAGTAAACTATTTAACTTCAACTGGCGATCGTTTTAAGCACTTCAACCGGAGGCACTTCAACCGGAGCTTTCTTTTAAATGCTTCGCGTTTGAAGTGGCCGCAAGTGGCCGCTGTAAGTTTGCCTTCGTTTGCCTTCTTTGTACTTGTAGTC

Full Affymetrix probeset data:

Annotations for 1633032_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720