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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633034_s_at:

>probe:Drosophila_2:1633034_s_at:158:611; Interrogation_Position=1102; Antisense; TGACCGGTGTCTATCTGGAGGAGCA
>probe:Drosophila_2:1633034_s_at:226:361; Interrogation_Position=1153; Antisense; GCAAGCTGACCACTCTCAAGAAGAT
>probe:Drosophila_2:1633034_s_at:146:471; Interrogation_Position=1205; Antisense; GTTCCTGTTCGACAAGACCCTGTAA
>probe:Drosophila_2:1633034_s_at:579:39; Interrogation_Position=1293; Antisense; ATCTGTTATCTGTCAGCCCAGAGAG
>probe:Drosophila_2:1633034_s_at:213:303; Interrogation_Position=1323; Antisense; CCGAGGGTCCGCTATTAAATCATCA
>probe:Drosophila_2:1633034_s_at:369:663; Interrogation_Position=1338; Antisense; TAAATCATCACCAGCCAAGTCGGCG
>probe:Drosophila_2:1633034_s_at:210:163; Interrogation_Position=1373; Antisense; AAATTATCCGTTCGACTGCGATCCT
>probe:Drosophila_2:1633034_s_at:135:263; Interrogation_Position=1408; Antisense; CAGCAAAATTCCACGTCTGTTCTTT
>probe:Drosophila_2:1633034_s_at:633:499; Interrogation_Position=1422; Antisense; GTCTGTTCTTTCTTATCAACCACTT
>probe:Drosophila_2:1633034_s_at:176:727; Interrogation_Position=1445; Antisense; TTGTGATTTCCGTACACCTCGGGAG
>probe:Drosophila_2:1633034_s_at:706:571; Interrogation_Position=1472; Antisense; GGCTCCACATTATGCAATCGCCGAG
>probe:Drosophila_2:1633034_s_at:425:45; Interrogation_Position=1488; Antisense; ATCGCCGAGATTTCGCCTAGGCTTA
>probe:Drosophila_2:1633034_s_at:151:521; Interrogation_Position=1514; Antisense; GTGGAATCGCTCATTCGCATAGTAA
>probe:Drosophila_2:1633034_s_at:416:679; Interrogation_Position=1533; Antisense; TAGTAAGACACTCAGCACAACCCAT

Paste this into a BLAST search page for me
TGACCGGTGTCTATCTGGAGGAGCAGCAAGCTGACCACTCTCAAGAAGATGTTCCTGTTCGACAAGACCCTGTAAATCTGTTATCTGTCAGCCCAGAGAGCCGAGGGTCCGCTATTAAATCATCATAAATCATCACCAGCCAAGTCGGCGAAATTATCCGTTCGACTGCGATCCTCAGCAAAATTCCACGTCTGTTCTTTGTCTGTTCTTTCTTATCAACCACTTTTGTGATTTCCGTACACCTCGGGAGGGCTCCACATTATGCAATCGCCGAGATCGCCGAGATTTCGCCTAGGCTTAGTGGAATCGCTCATTCGCATAGTAATAGTAAGACACTCAGCACAACCCAT

Full Affymetrix probeset data:

Annotations for 1633034_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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