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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633036_s_at:

>probe:Drosophila_2:1633036_s_at:717:579; Interrogation_Position=1048; Antisense; TGGCCATCAAGTGCCCGTCGATTCA
>probe:Drosophila_2:1633036_s_at:86:639; Interrogation_Position=1065; Antisense; TCGATTCACTACCATTTGGCGGGCA
>probe:Drosophila_2:1633036_s_at:390:535; Interrogation_Position=1124; Antisense; GGTGCTCGAGCGTTTCATCAACGAT
>probe:Drosophila_2:1633036_s_at:525:593; Interrogation_Position=1168; Antisense; TGGGCAAGATCTTCACGGGTCTCTA
>probe:Drosophila_2:1633036_s_at:554:139; Interrogation_Position=1182; Antisense; ACGGGTCTCTACTCGCTGGACGACA
>probe:Drosophila_2:1633036_s_at:330:69; Interrogation_Position=1233; Antisense; ATGGCGCTGCGCACTCCGGAGAGAT
>probe:Drosophila_2:1633036_s_at:588:463; Interrogation_Position=1255; Antisense; GATTCGTGCTGAAGCCGCAGCGCGA
>probe:Drosophila_2:1633036_s_at:396:123; Interrogation_Position=1345; Antisense; AGCGCTCCGCCTGGATTCTGATGGA
>probe:Drosophila_2:1633036_s_at:495:607; Interrogation_Position=1363; Antisense; TGATGGATCTGATTCATCCGCCGCT
>probe:Drosophila_2:1633036_s_at:69:47; Interrogation_Position=1378; Antisense; ATCCGCCGCTGACCAAGGGCTATAT
>probe:Drosophila_2:1633036_s_at:524:97; Interrogation_Position=1432; Antisense; AGATCGTGGACATGGTCTCCGAGCT
>probe:Drosophila_2:1633036_s_at:349:151; Interrogation_Position=1492; Antisense; ACATTGTGCACAACTACCAGGCGGG
>probe:Drosophila_2:1633036_s_at:391:71; Interrogation_Position=1510; Antisense; AGGCGGGACACATGCTGCGCACAAA
>probe:Drosophila_2:1633036_s_at:501:305; Interrogation_Position=1580; Antisense; CCTGGACAGTCCATATCTGATCGAT

Paste this into a BLAST search page for me
TGGCCATCAAGTGCCCGTCGATTCATCGATTCACTACCATTTGGCGGGCAGGTGCTCGAGCGTTTCATCAACGATTGGGCAAGATCTTCACGGGTCTCTAACGGGTCTCTACTCGCTGGACGACAATGGCGCTGCGCACTCCGGAGAGATGATTCGTGCTGAAGCCGCAGCGCGAAGCGCTCCGCCTGGATTCTGATGGATGATGGATCTGATTCATCCGCCGCTATCCGCCGCTGACCAAGGGCTATATAGATCGTGGACATGGTCTCCGAGCTACATTGTGCACAACTACCAGGCGGGAGGCGGGACACATGCTGCGCACAAACCTGGACAGTCCATATCTGATCGAT

Full Affymetrix probeset data:

Annotations for 1633036_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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