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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633089_a_at:

>probe:Drosophila_2:1633089_a_at:282:429; Interrogation_Position=2713; Antisense; GAGTTCTACGGCTATCATCTCAACA
>probe:Drosophila_2:1633089_a_at:141:131; Interrogation_Position=2788; Antisense; ACCTCGAACAGTGGTGCGTTTTCTA
>probe:Drosophila_2:1633089_a_at:631:315; Interrogation_Position=2828; Antisense; GCGGAGGATTATCCCGGGACTCCTT
>probe:Drosophila_2:1633089_a_at:711:527; Interrogation_Position=2843; Antisense; GGGACTCCTTCATGCAGTGCAAACA
>probe:Drosophila_2:1633089_a_at:603:85; Interrogation_Position=2858; Antisense; AGTGCAAACACTGCAACCGCTACTA
>probe:Drosophila_2:1633089_a_at:542:115; Interrogation_Position=2906; Antisense; AGCATGTGCGCAAGTACTGCCTCAA
>probe:Drosophila_2:1633089_a_at:501:491; Interrogation_Position=2940; Antisense; GTACAAGTGCGTGTCGTGCGAATAT
>probe:Drosophila_2:1633089_a_at:323:507; Interrogation_Position=2955; Antisense; GTGCGAATATCGATCCCGACGCAAG
>probe:Drosophila_2:1633089_a_at:132:225; Interrogation_Position=2977; Antisense; AAGGATCATGTCCTGCGGCACGCAA
>probe:Drosophila_2:1633089_a_at:477:619; Interrogation_Position=3017; Antisense; TGCTCTACGAGCAGTCCAGGGATGA
>probe:Drosophila_2:1633089_a_at:197:425; Interrogation_Position=3046; Antisense; GAGAGCCTCTATGTGATACGCAACG
>probe:Drosophila_2:1633089_a_at:53:337; Interrogation_Position=3157; Antisense; GCTGCCGCTCTTTGTGAGATCAATT
>probe:Drosophila_2:1633089_a_at:4:97; Interrogation_Position=3173; Antisense; AGATCAATTTCGATTTCGCCGGCAG
>probe:Drosophila_2:1633089_a_at:607:81; Interrogation_Position=3196; Antisense; AGGGATCTGACCATCACTGCGGTGC

Paste this into a BLAST search page for me
GAGTTCTACGGCTATCATCTCAACAACCTCGAACAGTGGTGCGTTTTCTAGCGGAGGATTATCCCGGGACTCCTTGGGACTCCTTCATGCAGTGCAAACAAGTGCAAACACTGCAACCGCTACTAAGCATGTGCGCAAGTACTGCCTCAAGTACAAGTGCGTGTCGTGCGAATATGTGCGAATATCGATCCCGACGCAAGAAGGATCATGTCCTGCGGCACGCAATGCTCTACGAGCAGTCCAGGGATGAGAGAGCCTCTATGTGATACGCAACGGCTGCCGCTCTTTGTGAGATCAATTAGATCAATTTCGATTTCGCCGGCAGAGGGATCTGACCATCACTGCGGTGC

Full Affymetrix probeset data:

Annotations for 1633089_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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