FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633100_a_at:

>probe:Drosophila_2:1633100_a_at:187:35; Interrogation_Position=1454; Antisense; ATCACACATCAAGTACATCAGCAAA
>probe:Drosophila_2:1633100_a_at:559:647; Interrogation_Position=1471; Antisense; TCAGCAAACACACACGATTCCAAGT
>probe:Drosophila_2:1633100_a_at:117:491; Interrogation_Position=1494; Antisense; GTACAGCGAATTATTGTCCCACAAG
>probe:Drosophila_2:1633100_a_at:62:729; Interrogation_Position=1507; Antisense; TTGTCCCACAAGAAATGCGATCGGT
>probe:Drosophila_2:1633100_a_at:379:451; Interrogation_Position=1525; Antisense; GATCGGTGTCGTTATTCTTTATTGA
>probe:Drosophila_2:1633100_a_at:621:547; Interrogation_Position=1612; Antisense; GGATGTAGGCTTGCATATGAAACAC
>probe:Drosophila_2:1633100_a_at:379:105; Interrogation_Position=1669; Antisense; AGACATTTGGTTATGCACCATGCAG
>probe:Drosophila_2:1633100_a_at:433:353; Interrogation_Position=1683; Antisense; GCACCATGCAGTTGGACATCTTTTT
>probe:Drosophila_2:1633100_a_at:71:131; Interrogation_Position=1751; Antisense; ACCTATTTGTATTCCTATGTTTGTA
>probe:Drosophila_2:1633100_a_at:452:83; Interrogation_Position=1785; Antisense; AGTGGAACGCACTAGGCAGGTGCAA
>probe:Drosophila_2:1633100_a_at:188:489; Interrogation_Position=1842; Antisense; GTACGTACGTAGATGTGAGCGCATA
>probe:Drosophila_2:1633100_a_at:342:417; Interrogation_Position=1858; Antisense; GAGCGCATACGTTTCTATGTGCATG
>probe:Drosophila_2:1633100_a_at:115:209; Interrogation_Position=1967; Antisense; AAGCTAGGCAATTCTGATCTGATGT
>probe:Drosophila_2:1633100_a_at:510:417; Interrogation_Position=2003; Antisense; GAGCGTTTTTTAGTTCTTGCTCGAA

Paste this into a BLAST search page for me
ATCACACATCAAGTACATCAGCAAATCAGCAAACACACACGATTCCAAGTGTACAGCGAATTATTGTCCCACAAGTTGTCCCACAAGAAATGCGATCGGTGATCGGTGTCGTTATTCTTTATTGAGGATGTAGGCTTGCATATGAAACACAGACATTTGGTTATGCACCATGCAGGCACCATGCAGTTGGACATCTTTTTACCTATTTGTATTCCTATGTTTGTAAGTGGAACGCACTAGGCAGGTGCAAGTACGTACGTAGATGTGAGCGCATAGAGCGCATACGTTTCTATGTGCATGAAGCTAGGCAATTCTGATCTGATGTGAGCGTTTTTTAGTTCTTGCTCGAA

Full Affymetrix probeset data:

Annotations for 1633100_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720