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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633115_a_at:

>probe:Drosophila_2:1633115_a_at:429:633; Interrogation_Position=6477; Antisense; TCCCCACCAATATTCGAATCCGAAT
>probe:Drosophila_2:1633115_a_at:10:369; Interrogation_Position=6492; Antisense; GAATCCGAATCCCTGTCTGCGAGTC
>probe:Drosophila_2:1633115_a_at:77:287; Interrogation_Position=6504; Antisense; CTGTCTGCGAGTCCCAAAAACTTTT
>probe:Drosophila_2:1633115_a_at:44:557; Interrogation_Position=6533; Antisense; GGACTTTTGCCAGCACTAGAACACC
>probe:Drosophila_2:1633115_a_at:408:599; Interrogation_Position=6574; Antisense; TTACTTACCACCAGAGACAACCAAT
>probe:Drosophila_2:1633115_a_at:725:695; Interrogation_Position=6614; Antisense; TTTCGCTTTTGTTTTGAGATCTCTT
>probe:Drosophila_2:1633115_a_at:85:377; Interrogation_Position=6680; Antisense; GAACGTAGAGGCCAACCGACAAACT
>probe:Drosophila_2:1633115_a_at:195:487; Interrogation_Position=6721; Antisense; GTAGCGATATCTCGGACTATAAATC
>probe:Drosophila_2:1633115_a_at:703:165; Interrogation_Position=6741; Antisense; AAATCGATGCAATCCACGAGCAGAA
>probe:Drosophila_2:1633115_a_at:387:381; Interrogation_Position=6774; Antisense; GAACCCTAGCACAAAGCGCGTTATA
>probe:Drosophila_2:1633115_a_at:66:125; Interrogation_Position=6788; Antisense; AGCGCGTTATATGCAATTCTCTCTC
>probe:Drosophila_2:1633115_a_at:39:247; Interrogation_Position=6802; Antisense; AATTCTCTCTCCAAACAACCAATAT
>probe:Drosophila_2:1633115_a_at:504:245; Interrogation_Position=6821; Antisense; CAATATTAAATACCCGTGTGTGTGT
>probe:Drosophila_2:1633115_a_at:233:371; Interrogation_Position=6926; Antisense; GAAGGCGGTATCTATCGATCAAATC

Paste this into a BLAST search page for me
TCCCCACCAATATTCGAATCCGAATGAATCCGAATCCCTGTCTGCGAGTCCTGTCTGCGAGTCCCAAAAACTTTTGGACTTTTGCCAGCACTAGAACACCTTACTTACCACCAGAGACAACCAATTTTCGCTTTTGTTTTGAGATCTCTTGAACGTAGAGGCCAACCGACAAACTGTAGCGATATCTCGGACTATAAATCAAATCGATGCAATCCACGAGCAGAAGAACCCTAGCACAAAGCGCGTTATAAGCGCGTTATATGCAATTCTCTCTCAATTCTCTCTCCAAACAACCAATATCAATATTAAATACCCGTGTGTGTGTGAAGGCGGTATCTATCGATCAAATC

Full Affymetrix probeset data:

Annotations for 1633115_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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