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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633131_s_at:

>probe:Drosophila_2:1633131_s_at:639:67; Interrogation_Position=2772; Antisense; ATGGCGCACTTGCTGACTGCTGCAA
>probe:Drosophila_2:1633131_s_at:364:573; Interrogation_Position=2797; Antisense; GGCGTTAAAAGGTTGCTGTGCTACT
>probe:Drosophila_2:1633131_s_at:465:597; Interrogation_Position=2813; Antisense; TGTGCTACTTATTTCGATGCCCTAC
>probe:Drosophila_2:1633131_s_at:479:695; Interrogation_Position=2847; Antisense; TTATCGCCGGTTCCAGGGATTCTGA
>probe:Drosophila_2:1633131_s_at:675:81; Interrogation_Position=2861; Antisense; AGGGATTCTGATGCCAAAGCGCGAC
>probe:Drosophila_2:1633131_s_at:348:325; Interrogation_Position=2881; Antisense; GCGACAGAACTCCTATTTTGCACTA
>probe:Drosophila_2:1633131_s_at:566:65; Interrogation_Position=2905; Antisense; AGGCGAAATTGTCTTCCATTCCGAG
>probe:Drosophila_2:1633131_s_at:174:165; Interrogation_Position=2933; Antisense; AAATCATTCGAGTCTTATCCGACAA
>probe:Drosophila_2:1633131_s_at:90:47; Interrogation_Position=2949; Antisense; ATCCGACAATTTTGCAAGCCCTTTC
>probe:Drosophila_2:1633131_s_at:23:205; Interrogation_Position=2964; Antisense; AAGCCCTTTCCGAAGCAATTGTCAG
>probe:Drosophila_2:1633131_s_at:513:247; Interrogation_Position=2980; Antisense; AATTGTCAGGGAATCCGTTCCTGCC
>probe:Drosophila_2:1633131_s_at:608:263; Interrogation_Position=3027; Antisense; CAGTTGCTCGTCTCATAGTTACCAA
>probe:Drosophila_2:1633131_s_at:729:673; Interrogation_Position=3042; Antisense; TAGTTACCAACCCAGATTCAGTGCC
>probe:Drosophila_2:1633131_s_at:352:69; Interrogation_Position=3144; Antisense; AGGCGTTCCGTGTGCTATACTTGAA

Paste this into a BLAST search page for me
ATGGCGCACTTGCTGACTGCTGCAAGGCGTTAAAAGGTTGCTGTGCTACTTGTGCTACTTATTTCGATGCCCTACTTATCGCCGGTTCCAGGGATTCTGAAGGGATTCTGATGCCAAAGCGCGACGCGACAGAACTCCTATTTTGCACTAAGGCGAAATTGTCTTCCATTCCGAGAAATCATTCGAGTCTTATCCGACAAATCCGACAATTTTGCAAGCCCTTTCAAGCCCTTTCCGAAGCAATTGTCAGAATTGTCAGGGAATCCGTTCCTGCCCAGTTGCTCGTCTCATAGTTACCAATAGTTACCAACCCAGATTCAGTGCCAGGCGTTCCGTGTGCTATACTTGAA

Full Affymetrix probeset data:

Annotations for 1633131_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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