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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633132_a_at:

>probe:Drosophila_2:1633132_a_at:265:693; Interrogation_Position=4171; Antisense; TTTGTGCTGTATATCTCGGGCGCCA
>probe:Drosophila_2:1633132_a_at:555:299; Interrogation_Position=4191; Antisense; CGCCATGGGCTATCTAACGTCTGAG
>probe:Drosophila_2:1633132_a_at:504:31; Interrogation_Position=4226; Antisense; ATAATCTCAGCATTCGCGAGGTGAA
>probe:Drosophila_2:1633132_a_at:656:71; Interrogation_Position=4244; Antisense; AGGTGAAGGCCCACTTTTGCAATTT
>probe:Drosophila_2:1633132_a_at:686:619; Interrogation_Position=4301; Antisense; TGCTCTGTTGCGGTCAGATCTTCAA
>probe:Drosophila_2:1633132_a_at:408:47; Interrogation_Position=4372; Antisense; ATGCTGCTGACCTCCAAAAACGAAA
>probe:Drosophila_2:1633132_a_at:401:29; Interrogation_Position=4418; Antisense; ATACGGTCGTTCTGTTGCTGGAGTC
>probe:Drosophila_2:1633132_a_at:550:331; Interrogation_Position=4434; Antisense; GCTGGAGTCCAATCCGGATATCGGC
>probe:Drosophila_2:1633132_a_at:429:469; Interrogation_Position=4484; Antisense; GTTGCTATACATCGACACCACGTGA
>probe:Drosophila_2:1633132_a_at:152:579; Interrogation_Position=4533; Antisense; GGCCTCGATCTTTAGCGCCAAGGAA
>probe:Drosophila_2:1633132_a_at:373:223; Interrogation_Position=4552; Antisense; AAGGAATATCCGTGCGACCATTACA
>probe:Drosophila_2:1633132_a_at:314:513; Interrogation_Position=4582; Antisense; GTGATAACCGTGACGCTCCTGATGA
>probe:Drosophila_2:1633132_a_at:257:429; Interrogation_Position=4619; Antisense; GAGTTGAGGTTCATGCCACGGCGTT
>probe:Drosophila_2:1633132_a_at:234:449; Interrogation_Position=4656; Antisense; GATCCTGGACAAGCGATTCTTCGGC

Paste this into a BLAST search page for me
TTTGTGCTGTATATCTCGGGCGCCACGCCATGGGCTATCTAACGTCTGAGATAATCTCAGCATTCGCGAGGTGAAAGGTGAAGGCCCACTTTTGCAATTTTGCTCTGTTGCGGTCAGATCTTCAAATGCTGCTGACCTCCAAAAACGAAAATACGGTCGTTCTGTTGCTGGAGTCGCTGGAGTCCAATCCGGATATCGGCGTTGCTATACATCGACACCACGTGAGGCCTCGATCTTTAGCGCCAAGGAAAAGGAATATCCGTGCGACCATTACAGTGATAACCGTGACGCTCCTGATGAGAGTTGAGGTTCATGCCACGGCGTTGATCCTGGACAAGCGATTCTTCGGC

Full Affymetrix probeset data:

Annotations for 1633132_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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