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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633135_s_at:

>probe:Drosophila_2:1633135_s_at:576:449; Interrogation_Position=2009; Antisense; GATCGCCGAGCAGCCAGAAACTGTT
>probe:Drosophila_2:1633135_s_at:154:391; Interrogation_Position=2025; Antisense; GAAACTGTTCGATCGTCTGGGCAAT
>probe:Drosophila_2:1633135_s_at:640:567; Interrogation_Position=2064; Antisense; GGCACGTCTTCAAATCCTTGACAGG
>probe:Drosophila_2:1633135_s_at:242:105; Interrogation_Position=2102; Antisense; AGACGCAGTGCTTCGATCCGGAAAC
>probe:Drosophila_2:1633135_s_at:713:265; Interrogation_Position=2146; Antisense; CAGGGACTCCCGGAATGTCATGTAC
>probe:Drosophila_2:1633135_s_at:426:599; Interrogation_Position=2161; Antisense; TGTCATGTACCGCAGCTTGGTGATC
>probe:Drosophila_2:1633135_s_at:347:37; Interrogation_Position=2234; Antisense; ATCATCTTCTGGTAGAGGTCCGGTC
>probe:Drosophila_2:1633135_s_at:716:273; Interrogation_Position=2268; Antisense; CATTGCTGACCTCCGATTCGAGAAA
>probe:Drosophila_2:1633135_s_at:534:105; Interrogation_Position=2288; Antisense; AGAAAGGTGCGGCTGCCCATCTTGA
>probe:Drosophila_2:1633135_s_at:643:513; Interrogation_Position=2373; Antisense; GTGATTGCATCTCCTGTATTCCAAA
>probe:Drosophila_2:1633135_s_at:227:679; Interrogation_Position=2399; Antisense; TAGGCGGGCACTATCTGAGCGGTCT
>probe:Drosophila_2:1633135_s_at:333:517; Interrogation_Position=2424; Antisense; GTGGTTCCTTGCAGATCAGTCGGTA
>probe:Drosophila_2:1633135_s_at:637:85; Interrogation_Position=2441; Antisense; AGTCGGTAGGCATGTACTTCGCTAT
>probe:Drosophila_2:1633135_s_at:692:479; Interrogation_Position=2484; Antisense; GTTTGCGCACTATTCCAGTCGATGT

Paste this into a BLAST search page for me
GATCGCCGAGCAGCCAGAAACTGTTGAAACTGTTCGATCGTCTGGGCAATGGCACGTCTTCAAATCCTTGACAGGAGACGCAGTGCTTCGATCCGGAAACCAGGGACTCCCGGAATGTCATGTACTGTCATGTACCGCAGCTTGGTGATCATCATCTTCTGGTAGAGGTCCGGTCCATTGCTGACCTCCGATTCGAGAAAAGAAAGGTGCGGCTGCCCATCTTGAGTGATTGCATCTCCTGTATTCCAAATAGGCGGGCACTATCTGAGCGGTCTGTGGTTCCTTGCAGATCAGTCGGTAAGTCGGTAGGCATGTACTTCGCTATGTTTGCGCACTATTCCAGTCGATGT

Full Affymetrix probeset data:

Annotations for 1633135_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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