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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633137_at:

>probe:Drosophila_2:1633137_at:163:525; Interrogation_Position=101; Antisense; GGGCTTCAGCATAGAGTATCTGCGA
>probe:Drosophila_2:1633137_at:445:527; Interrogation_Position=172; Antisense; GGGACTTCTCTGGATAATAACAAAC
>probe:Drosophila_2:1633137_at:637:177; Interrogation_Position=193; Antisense; AAACTGGCATCGTTGGGTGCCACAA
>probe:Drosophila_2:1633137_at:432:207; Interrogation_Position=220; Antisense; AAGCACCGGCTGCAGAACACATGGA
>probe:Drosophila_2:1633137_at:257:329; Interrogation_Position=254; Antisense; GCGTAAAGTACGACCCTGAAATATC
>probe:Drosophila_2:1633137_at:159:293; Interrogation_Position=321; Antisense; CGAGGACTTCTGGAACCTGTATTTC
>probe:Drosophila_2:1633137_at:309:379; Interrogation_Position=333; Antisense; GAACCTGTATTTCCGCATCGATACG
>probe:Drosophila_2:1633137_at:216:49; Interrogation_Position=360; Antisense; ATCCAAGCTCAACCGCGGCTGTGAT
>probe:Drosophila_2:1633137_at:493:331; Interrogation_Position=374; Antisense; GCGGCTGTGATTACATGCTCTTCAA
>probe:Drosophila_2:1633137_at:506:307; Interrogation_Position=413; Antisense; CCATGTGGGAGGATCCGCCGAACAA
>probe:Drosophila_2:1633137_at:44:387; Interrogation_Position=466; Antisense; GATAAAAGGTCCACAGCCGAACTGG
>probe:Drosophila_2:1633137_at:621:181; Interrogation_Position=493; Antisense; AAAACTTGGCTGGACGTGCTTCTTT
>probe:Drosophila_2:1633137_at:692:711; Interrogation_Position=512; Antisense; TTCTTTGCATGATTGGCGAGGCCTG
>probe:Drosophila_2:1633137_at:615:69; Interrogation_Position=530; Antisense; AGGCCTGCGATCACTGCGATCAGAT

Paste this into a BLAST search page for me
GGGCTTCAGCATAGAGTATCTGCGAGGGACTTCTCTGGATAATAACAAACAAACTGGCATCGTTGGGTGCCACAAAAGCACCGGCTGCAGAACACATGGAGCGTAAAGTACGACCCTGAAATATCCGAGGACTTCTGGAACCTGTATTTCGAACCTGTATTTCCGCATCGATACGATCCAAGCTCAACCGCGGCTGTGATGCGGCTGTGATTACATGCTCTTCAACCATGTGGGAGGATCCGCCGAACAAGATAAAAGGTCCACAGCCGAACTGGAAAACTTGGCTGGACGTGCTTCTTTTTCTTTGCATGATTGGCGAGGCCTGAGGCCTGCGATCACTGCGATCAGAT

Full Affymetrix probeset data:

Annotations for 1633137_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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