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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633143_s_at:

>probe:Drosophila_2:1633143_s_at:5:181; Interrogation_Position=3445; Antisense; AAAACAGTGATCTTTGCCAATTTTT
>probe:Drosophila_2:1633143_s_at:446:177; Interrogation_Position=3501; Antisense; AAACATGGTTCTTTGCATAGGTAGA
>probe:Drosophila_2:1633143_s_at:141:345; Interrogation_Position=3515; Antisense; GCATAGGTAGATAGGCCGACAAAGA
>probe:Drosophila_2:1633143_s_at:566:171; Interrogation_Position=3535; Antisense; AAAGAGAGCTGTGTCCGGCAAGTTT
>probe:Drosophila_2:1633143_s_at:196:515; Interrogation_Position=3545; Antisense; GTGTCCGGCAAGTTTATATGCCCTT
>probe:Drosophila_2:1633143_s_at:593:683; Interrogation_Position=3561; Antisense; TATGCCCTTGCAGTAATAACACATT
>probe:Drosophila_2:1633143_s_at:569:363; Interrogation_Position=3664; Antisense; GAATATCATACAGAATCCCCAAATA
>probe:Drosophila_2:1633143_s_at:92:165; Interrogation_Position=3722; Antisense; AAATCAGTGCAATCTGCATGGGTAA
>probe:Drosophila_2:1633143_s_at:298:189; Interrogation_Position=3770; Antisense; AACGGTTGCGGATGGACAGTCGAAC
>probe:Drosophila_2:1633143_s_at:638:439; Interrogation_Position=3780; Antisense; GATGGACAGTCGAACAGTCTGATAA
>probe:Drosophila_2:1633143_s_at:665:477; Interrogation_Position=3920; Antisense; GTTTAATGTCGCGAACTTACATGTA
>probe:Drosophila_2:1633143_s_at:125:699; Interrogation_Position=3972; Antisense; TTATCTTGCATCCTTTGTGTTAACT
>probe:Drosophila_2:1633143_s_at:695:345; Interrogation_Position=3979; Antisense; GCATCCTTTGTGTTAACTTTTACCT
>probe:Drosophila_2:1633143_s_at:505:707; Interrogation_Position=3998; Antisense; TTACCTTTTATGAACTGCTAACGAT

Paste this into a BLAST search page for me
AAAACAGTGATCTTTGCCAATTTTTAAACATGGTTCTTTGCATAGGTAGAGCATAGGTAGATAGGCCGACAAAGAAAAGAGAGCTGTGTCCGGCAAGTTTGTGTCCGGCAAGTTTATATGCCCTTTATGCCCTTGCAGTAATAACACATTGAATATCATACAGAATCCCCAAATAAAATCAGTGCAATCTGCATGGGTAAAACGGTTGCGGATGGACAGTCGAACGATGGACAGTCGAACAGTCTGATAAGTTTAATGTCGCGAACTTACATGTATTATCTTGCATCCTTTGTGTTAACTGCATCCTTTGTGTTAACTTTTACCTTTACCTTTTATGAACTGCTAACGAT

Full Affymetrix probeset data:

Annotations for 1633143_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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