FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633157_a_at:

>probe:Drosophila_2:1633157_a_at:447:531; Interrogation_Position=1936; Antisense; GGGTACCCAAGCAACATGATGCAGC
>probe:Drosophila_2:1633157_a_at:28:271; Interrogation_Position=1950; Antisense; CATGATGCAGCTTCGAGTCGTCAAC
>probe:Drosophila_2:1633157_a_at:20:261; Interrogation_Position=1957; Antisense; CAGCTTCGAGTCGTCAACTCAACAA
>probe:Drosophila_2:1633157_a_at:362:179; Interrogation_Position=1972; Antisense; AACTCAACAATTTTTCAGCCCTCGG
>probe:Drosophila_2:1633157_a_at:690:123; Interrogation_Position=1988; Antisense; AGCCCTCGGGCTCTATATATAAACT
>probe:Drosophila_2:1633157_a_at:694:445; Interrogation_Position=2033; Antisense; GATAACTAATCTGGTGGCACAATTT
>probe:Drosophila_2:1633157_a_at:312:355; Interrogation_Position=2049; Antisense; GCACAATTTTCGTTTTTCTACCAAG
>probe:Drosophila_2:1633157_a_at:109:499; Interrogation_Position=2089; Antisense; GTCTACTTAACAATTGATCCTCGAG
>probe:Drosophila_2:1633157_a_at:504:5; Interrogation_Position=2101; Antisense; ATTGATCCTCGAGTGGGAAACTGAA
>probe:Drosophila_2:1633157_a_at:91:687; Interrogation_Position=2145; Antisense; TATACCTATACAGATGCAAAGACAG
>probe:Drosophila_2:1633157_a_at:588:139; Interrogation_Position=2166; Antisense; ACAGGTATTAGACCGAGTTGAATTG
>probe:Drosophila_2:1633157_a_at:347:717; Interrogation_Position=2204; Antisense; TTCGGCCACAGCTGAGAAAATTGTT
>probe:Drosophila_2:1633157_a_at:682:3; Interrogation_Position=2223; Antisense; ATTGTTACCATGTGGCAACGGAAGC
>probe:Drosophila_2:1633157_a_at:516:173; Interrogation_Position=2444; Antisense; AAACCATATACAAGCCGAACAAACA

Paste this into a BLAST search page for me
GGGTACCCAAGCAACATGATGCAGCCATGATGCAGCTTCGAGTCGTCAACCAGCTTCGAGTCGTCAACTCAACAAAACTCAACAATTTTTCAGCCCTCGGAGCCCTCGGGCTCTATATATAAACTGATAACTAATCTGGTGGCACAATTTGCACAATTTTCGTTTTTCTACCAAGGTCTACTTAACAATTGATCCTCGAGATTGATCCTCGAGTGGGAAACTGAATATACCTATACAGATGCAAAGACAGACAGGTATTAGACCGAGTTGAATTGTTCGGCCACAGCTGAGAAAATTGTTATTGTTACCATGTGGCAACGGAAGCAAACCATATACAAGCCGAACAAACA

Full Affymetrix probeset data:

Annotations for 1633157_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720