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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633186_s_at:

>probe:Drosophila_2:1633186_s_at:244:689; Interrogation_Position=3209; Antisense; TATTCATGACATGTCCGAGGCGGAA
>probe:Drosophila_2:1633186_s_at:389:477; Interrogation_Position=3241; Antisense; GTTTTCTCCTCTTTTTAACTGGCAG
>probe:Drosophila_2:1633186_s_at:352:661; Interrogation_Position=3256; Antisense; TAACTGGCAGCGATCGCATTCCCAT
>probe:Drosophila_2:1633186_s_at:424:1; Interrogation_Position=3288; Antisense; ATGAAAGCCCTTAAACTCACCATTC
>probe:Drosophila_2:1633186_s_at:16:157; Interrogation_Position=3349; Antisense; ACACGTGCTTCAATCTGCTGGATCT
>probe:Drosophila_2:1633186_s_at:426:39; Interrogation_Position=3370; Antisense; ATCTGCCGCGCTACAAGACCAAGGA
>probe:Drosophila_2:1633186_s_at:612:553; Interrogation_Position=3392; Antisense; GGAGCGCCTCAAGTACAAGCTGCTA
>probe:Drosophila_2:1633186_s_at:729:665; Interrogation_Position=3415; Antisense; TACAGGCCATCCAGCAGACGCAGGG
>probe:Drosophila_2:1633186_s_at:581:81; Interrogation_Position=3436; Antisense; AGGGCTTCAGCCTGGTCTGATCGAT
>probe:Drosophila_2:1633186_s_at:213:451; Interrogation_Position=3454; Antisense; GATCGATCTGATCTGGACCCATTTT
>probe:Drosophila_2:1633186_s_at:636:37; Interrogation_Position=3514; Antisense; ATCTTCGGATTTCGCGCATTTTGGA
>probe:Drosophila_2:1633186_s_at:727:97; Interrogation_Position=3558; Antisense; TACTTTCAAAGACAACCCCAACGTG
>probe:Drosophila_2:1633186_s_at:315:561; Interrogation_Position=3582; Antisense; GGAACACTCATTTATCAGCGATCAA
>probe:Drosophila_2:1633186_s_at:630:223; Interrogation_Position=3701; Antisense; AAGGTTGGTGCATCAGTCTGAGGAC

Paste this into a BLAST search page for me
TATTCATGACATGTCCGAGGCGGAAGTTTTCTCCTCTTTTTAACTGGCAGTAACTGGCAGCGATCGCATTCCCATATGAAAGCCCTTAAACTCACCATTCACACGTGCTTCAATCTGCTGGATCTATCTGCCGCGCTACAAGACCAAGGAGGAGCGCCTCAAGTACAAGCTGCTATACAGGCCATCCAGCAGACGCAGGGAGGGCTTCAGCCTGGTCTGATCGATGATCGATCTGATCTGGACCCATTTTATCTTCGGATTTCGCGCATTTTGGATACTTTCAAAGACAACCCCAACGTGGGAACACTCATTTATCAGCGATCAAAAGGTTGGTGCATCAGTCTGAGGAC

Full Affymetrix probeset data:

Annotations for 1633186_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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