FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633198_a_at:

>probe:Drosophila_2:1633198_a_at:154:337; Interrogation_Position=3808; Antisense; GCTGCGCTATCGGTCTGTGACAGAA
>probe:Drosophila_2:1633198_a_at:544:595; Interrogation_Position=3823; Antisense; TGTGACAGAAGGACGCGGCGCTCTC
>probe:Drosophila_2:1633198_a_at:694:609; Interrogation_Position=3906; Antisense; TGACGCCATCTACGGCTAATGCGAC
>probe:Drosophila_2:1633198_a_at:702:233; Interrogation_Position=3923; Antisense; AATGCGACGCCGATGAGCGAGTTCC
>probe:Drosophila_2:1633198_a_at:723:625; Interrogation_Position=3956; Antisense; TGCCGCACAGTCACAGACGACGAGT
>probe:Drosophila_2:1633198_a_at:68:411; Interrogation_Position=3971; Antisense; GACGACGAGTGCTGAACCACGAGGA
>probe:Drosophila_2:1633198_a_at:351:309; Interrogation_Position=4003; Antisense; CCAGCGTCTGGGATGCATCAAATTT
>probe:Drosophila_2:1633198_a_at:2:551; Interrogation_Position=4055; Antisense; GGAGTCCACTGTAATTAGCGGCTTT
>probe:Drosophila_2:1633198_a_at:357:121; Interrogation_Position=4071; Antisense; AGCGGCTTTTCCTAGATAACTTCAG
>probe:Drosophila_2:1633198_a_at:608:527; Interrogation_Position=4095; Antisense; GGGAGATCAATGCTAACCTTTTCAA
>probe:Drosophila_2:1633198_a_at:488:191; Interrogation_Position=4167; Antisense; AACTTAAGTCTCATCGCATATCATT
>probe:Drosophila_2:1633198_a_at:664:471; Interrogation_Position=4227; Antisense; GTTTGCGGTACAACGCGGACTGTTT
>probe:Drosophila_2:1633198_a_at:254:553; Interrogation_Position=4243; Antisense; GGACTGTTTTTCACTTTCTCATCAA
>probe:Drosophila_2:1633198_a_at:126:401; Interrogation_Position=4275; Antisense; GACTTGGTCATTGCGTTATTTCTAA

Paste this into a BLAST search page for me
GCTGCGCTATCGGTCTGTGACAGAATGTGACAGAAGGACGCGGCGCTCTCTGACGCCATCTACGGCTAATGCGACAATGCGACGCCGATGAGCGAGTTCCTGCCGCACAGTCACAGACGACGAGTGACGACGAGTGCTGAACCACGAGGACCAGCGTCTGGGATGCATCAAATTTGGAGTCCACTGTAATTAGCGGCTTTAGCGGCTTTTCCTAGATAACTTCAGGGGAGATCAATGCTAACCTTTTCAAAACTTAAGTCTCATCGCATATCATTGTTTGCGGTACAACGCGGACTGTTTGGACTGTTTTTCACTTTCTCATCAAGACTTGGTCATTGCGTTATTTCTAA

Full Affymetrix probeset data:

Annotations for 1633198_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720