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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633227_s_at:

>probe:Drosophila_2:1633227_s_at:585:629; Interrogation_Position=1904; Antisense; TCCAGTCGCCCGGTGTCCGATATGG
>probe:Drosophila_2:1633227_s_at:458:25; Interrogation_Position=1923; Antisense; ATATGGCGGAGCTGACCCCAGAGAC
>probe:Drosophila_2:1633227_s_at:360:105; Interrogation_Position=1944; Antisense; AGACGTGGGACGTCATTTTGGACAA
>probe:Drosophila_2:1633227_s_at:584:13; Interrogation_Position=1958; Antisense; ATTTTGGACAAGACCGGCGGACTGC
>probe:Drosophila_2:1633227_s_at:323:455; Interrogation_Position=1994; Antisense; GATAATGTGAATTGGCGCATCTCTC
>probe:Drosophila_2:1633227_s_at:247:577; Interrogation_Position=2007; Antisense; GGCGCATCTCTCAGTTGTATCGAAA
>probe:Drosophila_2:1633227_s_at:252:323; Interrogation_Position=2048; Antisense; GCGAATATAGTATCGGCGGATTTCA
>probe:Drosophila_2:1633227_s_at:366:243; Interrogation_Position=2241; Antisense; AATATGCTCCTTATTGTACTGCTAG
>probe:Drosophila_2:1633227_s_at:605:669; Interrogation_Position=2257; Antisense; TACTGCTAGCTGTGTAGCTTCCCTA
>probe:Drosophila_2:1633227_s_at:101:487; Interrogation_Position=2270; Antisense; GTAGCTTCCCTAAACATGTTACATA
>probe:Drosophila_2:1633227_s_at:159:475; Interrogation_Position=2287; Antisense; GTTACATATTCGTAGTTTGTTCCCA
>probe:Drosophila_2:1633227_s_at:352:481; Interrogation_Position=2301; Antisense; GTTTGTTCCCATATAAGCGCATTCA
>probe:Drosophila_2:1633227_s_at:8:125; Interrogation_Position=2316; Antisense; AGCGCATTCACTTATTTCCTGATTG
>probe:Drosophila_2:1633227_s_at:277:363; Interrogation_Position=2352; Antisense; GAATTCGGATTGTTGCACCTAACCA

Paste this into a BLAST search page for me
TCCAGTCGCCCGGTGTCCGATATGGATATGGCGGAGCTGACCCCAGAGACAGACGTGGGACGTCATTTTGGACAAATTTTGGACAAGACCGGCGGACTGCGATAATGTGAATTGGCGCATCTCTCGGCGCATCTCTCAGTTGTATCGAAAGCGAATATAGTATCGGCGGATTTCAAATATGCTCCTTATTGTACTGCTAGTACTGCTAGCTGTGTAGCTTCCCTAGTAGCTTCCCTAAACATGTTACATAGTTACATATTCGTAGTTTGTTCCCAGTTTGTTCCCATATAAGCGCATTCAAGCGCATTCACTTATTTCCTGATTGGAATTCGGATTGTTGCACCTAACCA

Full Affymetrix probeset data:

Annotations for 1633227_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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