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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633230_a_at:

>probe:Drosophila_2:1633230_a_at:355:425; Interrogation_Position=2718; Antisense; GAGAGCATTGTGAACAGTCCTGTAA
>probe:Drosophila_2:1633230_a_at:332:87; Interrogation_Position=2733; Antisense; AGTCCTGTAAGCAGCATAGCCCCAG
>probe:Drosophila_2:1633230_a_at:331:27; Interrogation_Position=2748; Antisense; ATAGCCCCAGATCGTGTATGTCTTC
>probe:Drosophila_2:1633230_a_at:252:175; Interrogation_Position=2812; Antisense; AAAGCGCACGCGAACAGTGACCTTC
>probe:Drosophila_2:1633230_a_at:344:393; Interrogation_Position=2879; Antisense; GAAAGTTGTAGCAGTCGCATCGATT
>probe:Drosophila_2:1633230_a_at:365:23; Interrogation_Position=2920; Antisense; ATATCACACATCAGATCACGGCGAT
>probe:Drosophila_2:1633230_a_at:137:541; Interrogation_Position=2950; Antisense; GGATTATACGGGACCTAGCTCCACT
>probe:Drosophila_2:1633230_a_at:438:421; Interrogation_Position=2996; Antisense; GAGCACACGTGCAATGAGTCCACCT
>probe:Drosophila_2:1633230_a_at:447:327; Interrogation_Position=3042; Antisense; GCGATGAGTCGCAACCGCAGACGAT
>probe:Drosophila_2:1633230_a_at:538:461; Interrogation_Position=3064; Antisense; GATTCACATGCGAATACCTCCGTTT
>probe:Drosophila_2:1633230_a_at:131:477; Interrogation_Position=3085; Antisense; GTTTAATGGTTGTCCCTGCATGTAC
>probe:Drosophila_2:1633230_a_at:583:103; Interrogation_Position=3111; Antisense; AGACCTACTTGAATCTGGCCACTAT
>probe:Drosophila_2:1633230_a_at:676:229; Interrogation_Position=3165; Antisense; AATGAGAGTCCCTTATCCGAGATAA
>probe:Drosophila_2:1633230_a_at:281:323; Interrogation_Position=3192; Antisense; GCGCCCGTCGTTGCATTAAATCTTT

Paste this into a BLAST search page for me
GAGAGCATTGTGAACAGTCCTGTAAAGTCCTGTAAGCAGCATAGCCCCAGATAGCCCCAGATCGTGTATGTCTTCAAAGCGCACGCGAACAGTGACCTTCGAAAGTTGTAGCAGTCGCATCGATTATATCACACATCAGATCACGGCGATGGATTATACGGGACCTAGCTCCACTGAGCACACGTGCAATGAGTCCACCTGCGATGAGTCGCAACCGCAGACGATGATTCACATGCGAATACCTCCGTTTGTTTAATGGTTGTCCCTGCATGTACAGACCTACTTGAATCTGGCCACTATAATGAGAGTCCCTTATCCGAGATAAGCGCCCGTCGTTGCATTAAATCTTT

Full Affymetrix probeset data:

Annotations for 1633230_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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