FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633231_a_at:

>probe:Drosophila_2:1633231_a_at:137:329; Interrogation_Position=3374; Antisense; GGGAGCTTACCACACGGTAAACATA
>probe:Drosophila_2:1633231_a_at:102:485; Interrogation_Position=3421; Antisense; GTATGCGACAGCGTTTTACGTATAT
>probe:Drosophila_2:1633231_a_at:42:201; Interrogation_Position=3446; Antisense; AACCGAAATCTGTGGATAGCCTGGA
>probe:Drosophila_2:1633231_a_at:41:445; Interrogation_Position=3469; Antisense; GATGAGTCACCATCAATCATCGCAA
>probe:Drosophila_2:1633231_a_at:575:485; Interrogation_Position=3531; Antisense; GTAGAACTAATCACCAGGACAGGAA
>probe:Drosophila_2:1633231_a_at:33:27; Interrogation_Position=3563; Antisense; ATACGAGCAAGGTGCCCAGGCGGAT
>probe:Drosophila_2:1633231_a_at:192:269; Interrogation_Position=3579; Antisense; CAGGCGGATCGGATCTCGCAGCTTC
>probe:Drosophila_2:1633231_a_at:36:283; Interrogation_Position=3593; Antisense; CTCGCAGCTTCCTATCTTATTTTAA
>probe:Drosophila_2:1633231_a_at:318:193; Interrogation_Position=3635; Antisense; AACTCCAATTCAGTTCTGGCCAAGC
>probe:Drosophila_2:1633231_a_at:487:579; Interrogation_Position=3652; Antisense; GGCCAAGCAAACTACAATTCTCAAG
>probe:Drosophila_2:1633231_a_at:480:477; Interrogation_Position=3787; Antisense; GTTTTCGCTATAAGTCCTACATAAT
>probe:Drosophila_2:1633231_a_at:618:29; Interrogation_Position=3819; Antisense; ATACATAAGTGCTGCGTGTGGGCGC
>probe:Drosophila_2:1633231_a_at:665:511; Interrogation_Position=3834; Antisense; GTGTGGGCGCATAACAAACGAAACG
>probe:Drosophila_2:1633231_a_at:585:27; Interrogation_Position=3919; Antisense; ATACCTATATCTGGTCACTTCTAAC

Paste this into a BLAST search page for me
GGGAGCTTACCACACGGTAAACATAGTATGCGACAGCGTTTTACGTATATAACCGAAATCTGTGGATAGCCTGGAGATGAGTCACCATCAATCATCGCAAGTAGAACTAATCACCAGGACAGGAAATACGAGCAAGGTGCCCAGGCGGATCAGGCGGATCGGATCTCGCAGCTTCCTCGCAGCTTCCTATCTTATTTTAAAACTCCAATTCAGTTCTGGCCAAGCGGCCAAGCAAACTACAATTCTCAAGGTTTTCGCTATAAGTCCTACATAATATACATAAGTGCTGCGTGTGGGCGCGTGTGGGCGCATAACAAACGAAACGATACCTATATCTGGTCACTTCTAAC

Full Affymetrix probeset data:

Annotations for 1633231_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720