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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633253_s_at:

>probe:Drosophila_2:1633253_s_at:135:515; Interrogation_Position=2532; Antisense; GTGTAGGTCAGTATCAATTGCGAAA
>probe:Drosophila_2:1633253_s_at:502:391; Interrogation_Position=2577; Antisense; GAAACGAGAACATCCTGAGATTATG
>probe:Drosophila_2:1633253_s_at:632:461; Interrogation_Position=2595; Antisense; GATTATGATTACGAACGCGTTGCCA
>probe:Drosophila_2:1633253_s_at:375:381; Interrogation_Position=2607; Antisense; GAACGCGTTGCCAAGTAGCCTGAAG
>probe:Drosophila_2:1633253_s_at:371:375; Interrogation_Position=2645; Antisense; GAAGATAGTGCTTAGATGCGCCAGT
>probe:Drosophila_2:1633253_s_at:608:689; Interrogation_Position=2656; Antisense; TTAGATGCGCCAGTGAGTCAGTCCC
>probe:Drosophila_2:1633253_s_at:471:431; Interrogation_Position=2670; Antisense; GAGTCAGTCCCCATGCTGATTTATA
>probe:Drosophila_2:1633253_s_at:680:503; Interrogation_Position=2676; Antisense; GTCCCCATGCTGATTTATAGTTTAT
>probe:Drosophila_2:1633253_s_at:714:459; Interrogation_Position=2740; Antisense; GATTTCCTTCATTTCATTATCGGTT
>probe:Drosophila_2:1633253_s_at:491:273; Interrogation_Position=2754; Antisense; CATTATCGGTTTCATCCATGGATGC
>probe:Drosophila_2:1633253_s_at:458:357; Interrogation_Position=2792; Antisense; GCAAAACACGAGTACTTGGCGAATA
>probe:Drosophila_2:1633253_s_at:106:697; Interrogation_Position=2882; Antisense; TTTACTCCTTAAGAAACTGATTTGT
>probe:Drosophila_2:1633253_s_at:651:143; Interrogation_Position=2897; Antisense; ACTGATTTGTATAAGCTGCGCCCAT
>probe:Drosophila_2:1633253_s_at:713:31; Interrogation_Position=2907; Antisense; ATAAGCTGCGCCCATATATACATAC

Paste this into a BLAST search page for me
GTGTAGGTCAGTATCAATTGCGAAAGAAACGAGAACATCCTGAGATTATGGATTATGATTACGAACGCGTTGCCAGAACGCGTTGCCAAGTAGCCTGAAGGAAGATAGTGCTTAGATGCGCCAGTTTAGATGCGCCAGTGAGTCAGTCCCGAGTCAGTCCCCATGCTGATTTATAGTCCCCATGCTGATTTATAGTTTATGATTTCCTTCATTTCATTATCGGTTCATTATCGGTTTCATCCATGGATGCGCAAAACACGAGTACTTGGCGAATATTTACTCCTTAAGAAACTGATTTGTACTGATTTGTATAAGCTGCGCCCATATAAGCTGCGCCCATATATACATAC

Full Affymetrix probeset data:

Annotations for 1633253_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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