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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633280_s_at:

>probe:Drosophila_2:1633280_s_at:447:277; Interrogation_Position=2514; Antisense; CTATGGGTCCGAACACACTACAGCG
>probe:Drosophila_2:1633280_s_at:402:145; Interrogation_Position=2530; Antisense; ACTACAGCGGAAGCATGCCATGACA
>probe:Drosophila_2:1633280_s_at:247:169; Interrogation_Position=2560; Antisense; AAATGGCGGATTGCATGGCCCAGGA
>probe:Drosophila_2:1633280_s_at:406:153; Interrogation_Position=2620; Antisense; ACATGCCATCTACGGCCCATTAGGG
>probe:Drosophila_2:1633280_s_at:7:705; Interrogation_Position=2639; Antisense; TTAGGGCCTGCCAGCAGCTTCGGAA
>probe:Drosophila_2:1633280_s_at:163:93; Interrogation_Position=2679; Antisense; AGTTCATTGGGTTGATCTGGGCCTT
>probe:Drosophila_2:1633280_s_at:354:451; Interrogation_Position=2692; Antisense; GATCTGGGCCTTATGATTTATACAA
>probe:Drosophila_2:1633280_s_at:88:463; Interrogation_Position=2720; Antisense; GATTACACAACGTTTAGCGATCTAA
>probe:Drosophila_2:1633280_s_at:225:687; Interrogation_Position=2797; Antisense; TATTTTAACGGAGCTCTGGGAGTGT
>probe:Drosophila_2:1633280_s_at:318:549; Interrogation_Position=2815; Antisense; GGAGTGTAATCCCACACGGAAACCA
>probe:Drosophila_2:1633280_s_at:599:363; Interrogation_Position=2879; Antisense; GAATAAAGTGTGTGCGCTCTCTAGT
>probe:Drosophila_2:1633280_s_at:145:517; Interrogation_Position=2888; Antisense; GTGTGCGCTCTCTAGTAATCATGAA
>probe:Drosophila_2:1633280_s_at:659:139; Interrogation_Position=2974; Antisense; ACGGTCACAAAGTTCTTTCGGCTAT
>probe:Drosophila_2:1633280_s_at:249:245; Interrogation_Position=3044; Antisense; AATTACCTGTATGCTTTCGAATATG

Paste this into a BLAST search page for me
CTATGGGTCCGAACACACTACAGCGACTACAGCGGAAGCATGCCATGACAAAATGGCGGATTGCATGGCCCAGGAACATGCCATCTACGGCCCATTAGGGTTAGGGCCTGCCAGCAGCTTCGGAAAGTTCATTGGGTTGATCTGGGCCTTGATCTGGGCCTTATGATTTATACAAGATTACACAACGTTTAGCGATCTAATATTTTAACGGAGCTCTGGGAGTGTGGAGTGTAATCCCACACGGAAACCAGAATAAAGTGTGTGCGCTCTCTAGTGTGTGCGCTCTCTAGTAATCATGAAACGGTCACAAAGTTCTTTCGGCTATAATTACCTGTATGCTTTCGAATATG

Full Affymetrix probeset data:

Annotations for 1633280_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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