FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633290_a_at:

>probe:Drosophila_2:1633290_a_at:592:301; Interrogation_Position=1578; Antisense; CCCAGTGGAGCGTATTCGTGACATG
>probe:Drosophila_2:1633290_a_at:487:415; Interrogation_Position=1585; Antisense; GAGCGTATTCGTGACATGGATCACT
>probe:Drosophila_2:1633290_a_at:191:545; Interrogation_Position=1602; Antisense; GGATCACTGGTGATTGCCATTGGAC
>probe:Drosophila_2:1633290_a_at:38:513; Interrogation_Position=1611; Antisense; GTGATTGCCATTGGACAAACCATAA
>probe:Drosophila_2:1633290_a_at:546:43; Interrogation_Position=1638; Antisense; ATCGACTATTTTTATTGGGCTTACA
>probe:Drosophila_2:1633290_a_at:254:591; Interrogation_Position=1653; Antisense; TGGGCTTACATAACTCTTGACTAAT
>probe:Drosophila_2:1633290_a_at:623:413; Interrogation_Position=1783; Antisense; GACCAGATCACATACTTTAACTTTG
>probe:Drosophila_2:1633290_a_at:70:199; Interrogation_Position=1830; Antisense; AACGATGTTATTCTTAACTGTACTT
>probe:Drosophila_2:1633290_a_at:358:605; Interrogation_Position=1949; Antisense; TGATAAGACAATCCTGCCACACACG
>probe:Drosophila_2:1633290_a_at:721:257; Interrogation_Position=1968; Antisense; CACACGCACAGAGAAATCGACACAT
>probe:Drosophila_2:1633290_a_at:82:297; Interrogation_Position=1985; Antisense; CGACACATACAGGAGCGAGAATTAT
>probe:Drosophila_2:1633290_a_at:587:19; Interrogation_Position=2054; Antisense; ATTTGAATTCAATGCCAGTGTCTAT
>probe:Drosophila_2:1633290_a_at:537:233; Interrogation_Position=2064; Antisense; AATGCCAGTGTCTATAACGAATAAG
>probe:Drosophila_2:1633290_a_at:295:229; Interrogation_Position=2123; Antisense; AATGTATAAGCTGACCATGTTTAAA

Paste this into a BLAST search page for me
CCCAGTGGAGCGTATTCGTGACATGGAGCGTATTCGTGACATGGATCACTGGATCACTGGTGATTGCCATTGGACGTGATTGCCATTGGACAAACCATAAATCGACTATTTTTATTGGGCTTACATGGGCTTACATAACTCTTGACTAATGACCAGATCACATACTTTAACTTTGAACGATGTTATTCTTAACTGTACTTTGATAAGACAATCCTGCCACACACGCACACGCACAGAGAAATCGACACATCGACACATACAGGAGCGAGAATTATATTTGAATTCAATGCCAGTGTCTATAATGCCAGTGTCTATAACGAATAAGAATGTATAAGCTGACCATGTTTAAA

Full Affymetrix probeset data:

Annotations for 1633290_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720