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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633292_a_at:

>probe:Drosophila_2:1633292_a_at:187:7; Interrogation_Position=1415; Antisense; ATTGAAACCGCGACCAAGGCGTCGA
>probe:Drosophila_2:1633292_a_at:699:375; Interrogation_Position=1442; Antisense; GAAGAAGCGTGTACACTACCATCAC
>probe:Drosophila_2:1633292_a_at:589:33; Interrogation_Position=1462; Antisense; ATCACACGCTGGTTTCTTAGTCCAG
>probe:Drosophila_2:1633292_a_at:701:155; Interrogation_Position=1490; Antisense; ACACGGAATCCGATGCACAAGCTAA
>probe:Drosophila_2:1633292_a_at:379:357; Interrogation_Position=1504; Antisense; GCACAAGCTAATCGCCATCATCGAA
>probe:Drosophila_2:1633292_a_at:726:71; Interrogation_Position=1554; Antisense; AGGAAAACACGCACTTCCAATGGCT
>probe:Drosophila_2:1633292_a_at:303:257; Interrogation_Position=1565; Antisense; CACTTCCAATGGCTGTTACTTACAA
>probe:Drosophila_2:1633292_a_at:598:669; Interrogation_Position=1607; Antisense; TACTGAACCCAATTCGTTTACGCTT
>probe:Drosophila_2:1633292_a_at:630:695; Interrogation_Position=1641; Antisense; TTTAGTTCCGTTTCTCGTTCACTGA
>probe:Drosophila_2:1633292_a_at:518:715; Interrogation_Position=1652; Antisense; TTCTCGTTCACTGATTTCAATGCTA
>probe:Drosophila_2:1633292_a_at:696:477; Interrogation_Position=1741; Antisense; GTTTATTTGAATTACGCCTAAGCAT
>probe:Drosophila_2:1633292_a_at:695:277; Interrogation_Position=1758; Antisense; CTAAGCATAGCATGTTGGCCAACTA
>probe:Drosophila_2:1633292_a_at:19:379; Interrogation_Position=1906; Antisense; GAAGCGTAGCAGGAACACCAACTTT
>probe:Drosophila_2:1633292_a_at:481:561; Interrogation_Position=1917; Antisense; GGAACACCAACTTTTATTGCTGTAA

Paste this into a BLAST search page for me
ATTGAAACCGCGACCAAGGCGTCGAGAAGAAGCGTGTACACTACCATCACATCACACGCTGGTTTCTTAGTCCAGACACGGAATCCGATGCACAAGCTAAGCACAAGCTAATCGCCATCATCGAAAGGAAAACACGCACTTCCAATGGCTCACTTCCAATGGCTGTTACTTACAATACTGAACCCAATTCGTTTACGCTTTTTAGTTCCGTTTCTCGTTCACTGATTCTCGTTCACTGATTTCAATGCTAGTTTATTTGAATTACGCCTAAGCATCTAAGCATAGCATGTTGGCCAACTAGAAGCGTAGCAGGAACACCAACTTTGGAACACCAACTTTTATTGCTGTAA

Full Affymetrix probeset data:

Annotations for 1633292_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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