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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633359_a_at:

>probe:Drosophila_2:1633359_a_at:221:461; Interrogation_Position=1756; Antisense; GATTTTATCCAAAGCAACCAGTACT
>probe:Drosophila_2:1633359_a_at:689:89; Interrogation_Position=1775; Antisense; AGTACTTCCATATACCACACAAGGT
>probe:Drosophila_2:1633359_a_at:131:539; Interrogation_Position=1797; Antisense; GGTAATCACCAGTCGCAACTATCTT
>probe:Drosophila_2:1633359_a_at:624:191; Interrogation_Position=1813; Antisense; AACTATCTTCGCAACGATTCCATGT
>probe:Drosophila_2:1633359_a_at:674:461; Interrogation_Position=1828; Antisense; GATTCCATGTTCATCGAGGTTCGAG
>probe:Drosophila_2:1633359_a_at:543:683; Interrogation_Position=1881; Antisense; TATCCCACCCACCAGGAGCGATAAG
>probe:Drosophila_2:1633359_a_at:256:175; Interrogation_Position=1981; Antisense; AAACCCGCTTACAAACACGAGTATG
>probe:Drosophila_2:1633359_a_at:713:41; Interrogation_Position=2036; Antisense; ATCGATTCATCGTTTCAATATGCGT
>probe:Drosophila_2:1633359_a_at:514:25; Interrogation_Position=2116; Antisense; ATAGTCACATTGAGGCACTGTCGAG
>probe:Drosophila_2:1633359_a_at:477:117; Interrogation_Position=2165; Antisense; AGCTTTTATTGCAACATTTCCCTGG
>probe:Drosophila_2:1633359_a_at:256:17; Interrogation_Position=2180; Antisense; ATTTCCCTGGTCACTTTGTCAAGAT
>probe:Drosophila_2:1633359_a_at:246:659; Interrogation_Position=2206; Antisense; TAAGCAACTCTTTCATTTTTTGGTT
>probe:Drosophila_2:1633359_a_at:574:119; Interrogation_Position=2253; Antisense; AGCGATTTTTGAGAGGAACTTCCAT
>probe:Drosophila_2:1633359_a_at:513:19; Interrogation_Position=2276; Antisense; ATATTATTTGTCTTTACGAACGCAT

Paste this into a BLAST search page for me
GATTTTATCCAAAGCAACCAGTACTAGTACTTCCATATACCACACAAGGTGGTAATCACCAGTCGCAACTATCTTAACTATCTTCGCAACGATTCCATGTGATTCCATGTTCATCGAGGTTCGAGTATCCCACCCACCAGGAGCGATAAGAAACCCGCTTACAAACACGAGTATGATCGATTCATCGTTTCAATATGCGTATAGTCACATTGAGGCACTGTCGAGAGCTTTTATTGCAACATTTCCCTGGATTTCCCTGGTCACTTTGTCAAGATTAAGCAACTCTTTCATTTTTTGGTTAGCGATTTTTGAGAGGAACTTCCATATATTATTTGTCTTTACGAACGCAT

Full Affymetrix probeset data:

Annotations for 1633359_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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